contrast matrix Posts

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What is the correct contrast matrix if one treatment must be compared to both of the other two treatments, but separately?

limma edger design matrix model.matrix contrast matrix written 3.4 years ago by Peter • 0 • updated 3.4 years ago by Gavin Kelly • 570

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Design and Contrast Matrix for Linear Model. To Combine or not to Combine?

limma design and contrast matrix design matrix contrast matrix written 14 months ago by mikhael.manurung • 200 • updated 14 months ago by James W. MacDonald ♦ 52k

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Design matrix and contrast for RNA knockdown experiment

limma design matrix contrast matrix written 3.2 years ago by maltethodberg • 140 • updated 3.2 years ago by Aaron Lun • 25k

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Syntax of DESeq2 contrast argument for all pairwise comparisons

deseq2 contrast matrix written 2.8 years ago by natalie.hull • 0 • updated 2.8 years ago by Michael Love ♦ 26k

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Time-course analysis with limma for >3 time points

timecourse limma design matrix multiple time points contrast matrix written 2.5 years ago by relathman • 20 • updated 2.5 years ago by James W. MacDonald ♦ 52k

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differentially expressed genes without contrasts

limma toptable makecontrasts contrast matrix written 2.4 years ago by hoe • 0 • updated 2.4 years ago by Ryan C. Thompson ♦ 7.4k

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Help to understand my contrast.matrix and to interpret my topTable results

toptable differential gene expression makecontrasts contrast matrix written 2.2 years ago by stinehedensted • 0