0
votes
1
answer
44
views
1
answer
Discrepancy in extracting contrasts
deseq2 contrast batch effect resultsnames written 8 days ago by pkachroo10 • updated 8 days ago by Michael Love14k
2
votes
1
answer
381
views
1
answer
0
votes
1
answer
377
views
1
answer
4
votes
1
answer
621
views
1
answer
DESeq2 lfcShrink() usage of coef vs. usage of contrast
deseq2 contrast lfc coef written 10 weeks ago by Anke Busch0 • updated 10 weeks ago by Michael Love14k
0
votes
2
answers
132
views
2
answers
2
votes
1
answer
121
views
1
answer
EdgeR -ANOVA-like test vs testing individual contrasts
edger anova contrast t-test written 3 months ago by Maiv0 • updated 3 months ago by Aaron Lun16k
0
votes
1
answer
202
views
1
answer
0
votes
1
answer
221
views
1
answer
how to extract complex contrast with DESeq2
deseq2 contrast differential gene expression written 5 months ago by aec30 • updated 5 months ago by Michael Love14k
0
votes
2
answers
273
views
2
answers
3
votes
2
answers
289
views
2
answers
0
votes
1
answer
235
views
1
answer
intra-sample time series comparison using DESeq2
rnaseq deseq2 design contrast time course written 7 months ago by prppmet0 • updated 7 months ago by Michael Love14k
2
votes
2
answers
308
views
2
answers
2
votes
1
answer
186
views
1
answer
0
votes
1
answer
229
views
1
answer
edgeR constrast drug treatments and time points
edger contrast written 11 months ago by sergio.martinezcuesta10 • updated 11 months ago by Aaron Lun16k
0
votes
1
answer
306
views
1
answer
limma camera function Multiple contrasts
microarray limma camera contrast written 12 months ago by gaby86380 • updated 12 months ago by Gordon Smyth31k
2
votes
1
answer
317
views
1
answer
1
vote
1
answer
289
views
1
answer
Are these contrasts correct for use in DESeq2?
deseq2 contrast written 17 months ago by Jane Merlevede90 • updated 17 months ago by Michael Love14k
2
votes
2
answers
443
views
2
answers
2
votes
1
answer
355
views
1
answer
2
votes
2
answers
777
views
2
answers
0
votes
3
answers
922
views
3
answers
4
votes
1
answer
483
views
1
answer
4
votes
2
answers
413
views
2
answers
1
vote
2
answers
389
views
2
answers
0
votes
1
answer
497
views
1
answer
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