Showing: counts • reset
Search
3
votes
2
answers
4.8k
views
2
answers
limma voom accessing normalised counts tables
geneexpression rnaseq limma voom counts written 4.5 years ago by Peter Crisp • 10 • updated 4.5 years ago by Steve Lianoglou ♦ 12k
3
votes
1
answer
2.8k
views
1
answer
Problem making DESeq dataset; Error all variables in design formula must be columns in colData
rnaseq deseq deseq2 counts differential gene expression written 3.0 years ago by wannes.nauwynck • 0 • updated 3.0 years ago by Michael Love ♦ 23k
1
vote
1
answer
2.7k
views
1
answer
How do I extract read counts from DESeq2
deseq2 counts covariates written 3.1 years ago by hechtp • 0 • updated 3.1 years ago by Michael Love ♦ 23k
0
votes
1
answer
2.6k
views
1
answer
Not full rank design using Deseq2
deseq2 counts design written 4.2 years ago by Rainy Gorilla • 20 • updated 4.2 years ago by Michael Love ♦ 23k
2
votes
1
answer
1.7k
views
1
answer
Limma/DESeq2: Statistic and readcount of biological replicates
normalization limma deseq2 counts written 3.3 years ago by Radek • 50 • updated 3.3 years ago by Aaron Lun • 23k
1
vote
2
answers
1.4k
views
2
answers
HTSeq-count on several gff3/gtf files for use in DESeq2
htseqtools deseq2 counts cuffdiff written 3.2 years ago by Jon Bråte • 150
6
votes
1
answer
1.4k
views
1
answer
Can edgeR TMM normalization be used for other count data?
normalization edger counts tmm written 24 months ago by jol.espinoz • 20 • updated 24 months ago by James W. MacDonald ♦ 49k
2
votes
2
answers
1.2k
views
2
answers
chromosome name in summarizeOverlaps for RNASeq data
rnaseq annotation counts summarizeoverlaps written 3.3 years ago by bioprog • 0
2
votes
1
answer
1.0k
views
1
answer
DESeq2 Input format
deseq2 counts written 2.6 years ago by uzer • 0 • updated 2.6 years ago by Michael Love ♦ 23k
1
vote
1
answer
879
views
1
answer
deseq2 normalized data
regression deseq2 counts written 3.6 years ago by akp • 0 • updated 3.6 years ago by Michael Love ♦ 23k
4
votes
2
answers
718
views
2
answers
Help: extract counts from RNA-seq .bam/.bai files
edger counts written 23 months ago by mat149 • 40 • updated 23 months ago by Aaron Lun • 23k
0
votes
1
answer
695
views
1
answer
unable to find an inherited method for function counts for signature DESeqTransform
deseq2 counts variance deseqtransform deviation written 18 months ago by Casper Peters • 0 • updated 18 months ago by Michael Love ♦ 23k
0
votes
0
answers
668
views
0
answers
DEXSeq error: Count files do not correspond to the flattened annotation file
dexseq gff counts written 4.4 years ago by Assa Yeroslaviz • 1.4k
0
votes
1
answer
623
views
1
answer
IRanges object from count matrix
rnaseq iranges genomicranges featurecounts counts written 2.2 years ago by Assa Yeroslaviz • 1.4k • updated 2.2 years ago by Hervé Pagès ♦♦ 13k
2
votes
1
answer
615
views
1
answer
Can I calculate counts from the base mean and log2fc outputs of DESeq2? Also, can I calculate error for counts values from lfcse output?
chipseq deseq2 error counts log2fc written 2.9 years ago by robin.uchiyama • 0 • updated 2.9 years ago by Michael Love ♦ 23k
2
votes
1
answer
592
views
1
answer
converting extremely sparse count dataframe to continuous distributions for study in WGCNA
voom counts limma voom written 2.7 years ago by chrisclarkson100 • 30 • updated 2.7 years ago by Gordon Smyth ♦ 37k
1
vote
1
answer
584
views
1
answer
DESeq2: Do basemean values take into account interaction effects?
deseq2 counts normalized counts written 2.7 years ago by snamjoshi87 • 20 • updated 2.7 years ago by Steve Lianoglou ♦ 12k
3
votes
1
answer
474
views
1
answer
window counts in csaw
counts csaw written 2.9 years ago by nobishvarghese • 0 • updated 2.9 years ago by Aaron Lun • 23k
1
vote
1
answer
460
views
1
answer
comparing transcripts expression between conditions
counts transcripts salmon significance written 2.8 years ago by Assa Yeroslaviz • 1.4k
2
votes
1
answer
431
views
1
answer
Deseq2: padj value changes with varying alpha
rnaseq deseq2 counts written 18 months ago by yoursbassanio • 0 • updated 18 months ago by Michael Love ♦ 23k
0
votes
2
answers
423
views
2
answers
small RNAs quantification
smallrna counts written 2.6 years ago by riccardo • 70
0
votes
2
answers
400
views
2
answers
DESeq2 ComputeSumFactors extract normalized counts
normalization deseq2 counts written 19 months ago by herrmannmaria94 • 0 • updated 19 months ago by Michael Love ♦ 23k
0
votes
0
answers
329
views
0
answers
Combined strand specific and unstranded samples
rnaseq strand counts differential gene expression batch effect written 19 months ago by lirongrossmann • 20
2
votes
1
answer
314
views
1
answer
Counting reads in fixed width peaks with DiffBind::dba.count without re-centering?
chipseq diffbind counts bedtools peaks written 12 months ago by Ni-Ar • 0 • updated 11 months ago by Rory Stark • 2.8k
0
votes
2
answers
271
views
2
answers
Conversion from counts to FPKM
normalization deseq2 counts fpkm fpkm() written 4 months ago by chiara.facciotto • 0 • updated 4 weeks ago by Ahmed Alhendi • 0
<prev • 32 results • page 1 of 2 • next >
Recent...
Replies
Votes
Awards • All »
Locations • All »
  • Switzerland/Lausanne, 2 minutes ago
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 270 users visited in the last hour