Showing: countsreset
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Help: extract counts from RNA-seq .bam/.bai files
edger counts written 2.6 years ago by mat14940 • updated 2.6 years ago by Aaron Lun25k
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Using DiffBind with only a counts table?
diffbind counts atac differential analysis atacseq written 9 months ago by pgontarz10 • updated 8 months ago by Rory Stark3.0k
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limma voom accessing normalised counts tables
geneexpression rnaseq limma voom counts written 5.1 years ago by Peter Crisp10 • updated 5.1 years ago by Steve Lianoglou12k
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Not full rank design using Deseq2
deseq2 counts design written 4.8 years ago by Rainy Gorilla20 • updated 4.8 years ago by Michael Love26k
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deseq2 normalized data
regression deseq2 counts written 4.2 years ago by akp0 • updated 4.2 years ago by Michael Love26k
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Limma/DESeq2: Statistic and readcount of biological replicates
normalization limma deseq2 counts written 3.9 years ago by Radek60 • updated 3.9 years ago by Aaron Lun25k
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How do I extract read counts from DESeq2
deseq2 counts covariates written 3.8 years ago by hechtp0 • updated 3.8 years ago by Michael Love26k
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window counts in csaw
counts csaw written 3.6 years ago by nobishvarghese0 • updated 3.6 years ago by Aaron Lun25k
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DESeq2 Input format
deseq2 counts written 3.2 years ago by uzer0 • updated 3.2 years ago by Michael Love26k
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small RNAs quantification
smallrna counts written 3.2 years ago by ribioinfo90
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763
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IRanges object from count matrix
rnaseq iranges genomicranges featurecounts counts written 2.8 years ago by Assa Yeroslaviz1.4k • updated 2.8 years ago by Hervé Pagès ♦♦ 14k
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Can edgeR TMM normalization be used for other count data?
normalization edger counts tmm written 2.6 years ago by jol.espinoz20 • updated 2.6 years ago by James W. MacDonald52k
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DESeq2 ComputeSumFactors extract normalized counts
normalization deseq2 counts written 2.2 years ago by herrmannmaria940 • updated 2.2 years ago by Michael Love26k
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