Showing: coveragereset
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coverage QC file mean duplication and "mom" columns
coverage purecn written 18 months ago by twtoal0 • updated 18 months ago by markus.riester110
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Plot per-base-coverage output of a bed file of whole genome
coverage bed written 2.3 years ago by sgupt460 • updated 2.3 years ago by James W. MacDonald51k
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592
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Gviz off-by-one with STAR BAM
coverage gviz bam star off-by-one written 2.7 years ago by bernt.popp0 • updated 2.7 years ago by Martin Morgan ♦♦ 24k
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bamsignals - bamcoverage has no strand-specific option??
coverage bam bamsignals written 2.8 years ago by gtho12340 • updated 2.8 years ago by helmuth0
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573
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Views with RleLists and IRangesLists
coverage genomicalignments views irangeslist rlelist written 3.3 years ago by ccanchaya0 • updated 3.3 years ago by Hervé Pagès ♦♦ 14k
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549
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RNA-Seq metagene coverage
coverage written 3.3 years ago by Jake60
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1
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Efficient coverage calculation with RleList and GRanges
coverage granges rle view mean written 3.4 years ago by Christian Ruckert170 • updated 3.4 years ago by Michael Lawrence11k
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606
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2
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Using edgeR with "traditional" coverage data?
rnaseq coverage edger written 3.6 years ago by bastien.chevreux0 • updated 3.6 years ago by Ryan C. Thompson7.4k
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692
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How to set a negative coverage to ZERO
coverage genomicranges written 3.6 years ago by vanhzh0 • updated 3.6 years ago by Martin Morgan ♦♦ 24k
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Does coverage() split exon spanning RNA-seq reads?
coverage genomicranges genomicalignments written 4.4 years ago by Jake60 • updated 4.4 years ago by Martin Morgan ♦♦ 24k
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Calling coverage on GRanges object yields small negative values
coverage granges written 4.6 years ago by Anya10 • updated 4.6 years ago by Hervé Pagès ♦♦ 14k
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Shrink or Expand RLE
coverage iranges granges rle written 4.6 years ago by gen30 • updated 4.6 years ago by Martin Morgan ♦♦ 24k
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Error using Bsmooth.tstat due to NAs
coverage bsseq written 5.2 years ago by Guest User12k • updated 4.7 years ago by parker0
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"Normalising" GRanges coverage object
coverage go gviz written 5.3 years ago by Aliaksei Holik350 • updated 5.3 years ago by Ryan C. Thompson7.4k
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840
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5 follow
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GOseq: count bias correction variations?
coverage goseq written 5.3 years ago by Christopher Conley40 • updated 2.6 years ago by Gordon Smyth39k
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740
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