Showing: coverage • reset
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Coverage function assigns wrong weights for gapped alignments
coverage genomicalignments splicing written 2.7 years ago by rasi1983 • 10 • updated 9 weeks ago by Michael Lawrence ♦ 11k
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Coverage profile comparison
coverage clustering correlation targeted sequencing euclid written 14 months ago by faramer86 • 0
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274
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coverage QC file mean duplication and "mom" columns
coverage purecn written 19 months ago by twtoal • 0 • updated 19 months ago by markus.riester • 110
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coverage() output SimpleRleList cannot be converted to GRanges
coverage genomicranges granges bug rlelist written 22 months ago by xiaotong.yao23 • 10 • updated 22 months ago by Hervé Pagès ♦♦ 14k
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DSS CpG coverage threshold
coverage dss wgbs written 2.2 years ago by floriandeckert • 30
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478
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Plotting bigwig coverage over chromosomal coordinates with wiggleplotr
coverage ngs bigwig wiggleplotr written 2.2 years ago by borgmichael • 0 • updated 2.2 years ago by kaur.alasoo • 30
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Plot per-base-coverage output of a bed file of whole genome
coverage bed written 2.3 years ago by sgupt46 • 0 • updated 2.3 years ago by James W. MacDonald ♦ 52k
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5 follow
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GOseq: count bias correction variations?
coverage goseq written 5.4 years ago by Christopher Conley • 40 • updated 2.7 years ago by Gordon Smyth ♦ 39k
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Gviz off-by-one with STAR BAM
coverage gviz bam star off-by-one written 2.7 years ago by bernt.popp • 0 • updated 2.7 years ago by Martin Morgan ♦♦ 24k
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bamsignals - bamcoverage has no strand-specific option??
coverage bam bamsignals written 2.9 years ago by gtho123 • 40 • updated 2.9 years ago by helmuth • 0
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Views with RleLists and IRangesLists
coverage genomicalignments views irangeslist rlelist written 3.4 years ago by ccanchaya • 0 • updated 3.4 years ago by Hervé Pagès ♦♦ 14k
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562
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RNA-Seq metagene coverage
coverage written 3.4 years ago by Jake • 60
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842
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1
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Efficient coverage calculation with RleList and GRanges
coverage granges rle view mean written 3.4 years ago by Christian Ruckert • 170 • updated 3.4 years ago by Michael Lawrence ♦ 11k
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how does coverage() works
coverage biostrings iranges rle written 3.5 years ago by likeeatingpizza • 0
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677
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Using edgeR with "traditional" coverage data?
rnaseq coverage edger written 3.6 years ago by bastien.chevreux • 0 • updated 3.6 years ago by Ryan C. Thompson ♦ 7.4k
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How to set a negative coverage to ZERO
coverage genomicranges written 3.7 years ago by vanhzh • 0 • updated 3.7 years ago by Martin Morgan ♦♦ 24k
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Is there an easy way to extend coverage to seqlengths and fill with zeroes?
coverage seqlengths s4vectors written 3.8 years ago by liz.ingsimmons • 140
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5 follow
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BH vs BY in p.adjust + FDR interpretation
coverage limma written 13.4 years ago by Gordon Smyth ♦ 39k
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BH vs BY in p.adjust + FDR interpretation
coverage limma written 13.4 years ago by lemerle@embl.de • 50 • updated 3.9 years ago by Gordon Smyth ♦ 39k
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Bioconductor 2.12 is released
biocviews acgh snp transcription sequencing microarray coverage alignment annotation go written 6.7 years ago by Dan Tenenbaum • 8.2k • updated 4.4 years ago by marksteve952 • 0
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Does coverage() split exon spanning RNA-seq reads?
coverage genomicranges genomicalignments written 4.4 years ago by Jake • 60 • updated 4.4 years ago by Martin Morgan ♦♦ 24k
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SAAP-BS data analysis (RRBS) - BiSeq use and Coverage Histogram
coverage biseq rrbs saap-bs written 4.6 years ago by maria.maqueda • 0
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Calling coverage on GRanges object yields small negative values
coverage granges written 4.7 years ago by Anya • 10 • updated 4.7 years ago by Hervé Pagès ♦♦ 14k
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Shrink or Expand RLE
coverage iranges granges rle written 4.7 years ago by gen • 30 • updated 4.7 years ago by Martin Morgan ♦♦ 24k
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Error using Bsmooth.tstat due to NAs
coverage bsseq written 5.3 years ago by Guest User • 12k • updated 4.8 years ago by parker • 0
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