cuffdiff Posts

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384

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WGCNA Co-expression network analysis on cuffdiff output

wgcna cuffdiff written 14 months ago by sbbinfo90 • 0

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415

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Unable to load sqlite file generated by Cuffdiff

sqlite cuffdiff written 2.1 years ago by handgabriel • 0

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437

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KEGG with pathview using CuffDiff data

kegg cuffdiff readcufflinks cuff written 2.1 years ago by pierre.biojoux • 0 • updated 2.1 years ago by thokall • 160

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1.6k

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HTSeq-count on several gff3/gtf files for use in DESeq2

htseqtools deseq2 counts cuffdiff written 3.8 years ago by Jon Bråte • 160

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750

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GAGE from Cuffdiff workflow: Error in names(cuff.fc) = gnames : attempt to set an attribute on NULL

gage gene names cuffdiff written 4.0 years ago by user31888 • 30 • updated 4.0 years ago by Luo Weijun • 1.5k

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1.2k

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6 follow

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Error in SpliceR and GTF file issue

splicer cuffdiff written 4.5 years ago by mfahim • 0 • updated 4.3 years ago by deppt002 • 0

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658

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Diffrential expression analysis of human vs. mouse

deseq2 differential gene expression cuffdiff written 4.4 years ago by Assa Yeroslaviz • 1.4k

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1.4k

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Incongruencies between DEXSeq and BitSeq/Cuffdiff

dexseq bitseq isoforms cuffdiff differential exon usage written 4.5 years ago by elle • 10

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993

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How many 'expressed genes' do I have in my dataset?

deseq2 cuffdiff written 4.5 years ago by a.de-giorgio12 • 0 • updated 4.5 years ago by Michael Love ♦ 26k

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890

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Help with cummeRbund

rnaseq cummerbund script analysis cuffdiff written 4.6 years ago by mfahim • 0 • updated 4.6 years ago by andrew.j.skelton73 • 320