cuffdiff Posts

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WGCNA Co-expression network analysis on cuffdiff output

wgcna cuffdiff written 10 months ago by sbbinfo90 • 0

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371

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Unable to load sqlite file generated by Cuffdiff

sqlite cuffdiff written 20 months ago by handgabriel • 0

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391

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KEGG with pathview using CuffDiff data

kegg cuffdiff readcufflinks cuff written 20 months ago by pierre.biojoux • 0 • updated 20 months ago by thokall • 160

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HTSeq-count on several gff3/gtf files for use in DESeq2

htseqtools deseq2 counts cuffdiff written 3.4 years ago by Jon Bråte • 160

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702

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GAGE from Cuffdiff workflow: Error in names(cuff.fc) = gnames : attempt to set an attribute on NULL

gage gene names cuffdiff written 3.6 years ago by user31888 • 30 • updated 3.6 years ago by Luo Weijun • 1.4k

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1.1k

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6 follow

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Error in SpliceR and GTF file issue

splicer cuffdiff written 4.1 years ago by mfahim • 0 • updated 3.9 years ago by deppt002 • 0

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591

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Diffrential expression analysis of human vs. mouse

deseq2 differential gene expression cuffdiff written 4.0 years ago by Assa Yeroslaviz • 1.4k

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1.3k

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Incongruencies between DEXSeq and BitSeq/Cuffdiff

dexseq bitseq isoforms cuffdiff differential exon usage written 4.2 years ago by elle • 10

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936

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How many 'expressed genes' do I have in my dataset?

deseq2 cuffdiff written 4.2 years ago by a.de-giorgio12 • 0 • updated 4.2 years ago by Michael Love ♦ 24k

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829

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Help with cummeRbund

rnaseq cummerbund script analysis cuffdiff written 4.2 years ago by mfahim • 0 • updated 4.2 years ago by andrew.j.skelton73 • 320