cuffdiff Posts

votes

answers

360

views

answers

WGCNA Co-expression network analysis on cuffdiff output

wgcna cuffdiff written 13 months ago by sbbinfo90 • 0

votes

answers

398

views

answers

Unable to load sqlite file generated by Cuffdiff

sqlite cuffdiff written 23 months ago by handgabriel • 0

votes

answer

424

views

answer

KEGG with pathview using CuffDiff data

kegg cuffdiff readcufflinks cuff written 23 months ago by pierre.biojoux • 0 • updated 23 months ago by thokall • 160

vote

answers

1.6k

views

answers

HTSeq-count on several gff3/gtf files for use in DESeq2

htseqtools deseq2 counts cuffdiff written 3.7 years ago by Jon Bråte • 160

votes

answer

736

views

answer

GAGE from Cuffdiff workflow: Error in names(cuff.fc) = gnames : attempt to set an attribute on NULL

gage gene names cuffdiff written 3.9 years ago by user31888 • 30 • updated 3.9 years ago by Luo Weijun • 1.5k

votes

answers

1.2k

views

6 follow

answers

Error in SpliceR and GTF file issue

splicer cuffdiff written 4.3 years ago by mfahim • 0 • updated 4.1 years ago by deppt002 • 0

votes

answers

641

views

answers

Diffrential expression analysis of human vs. mouse

deseq2 differential gene expression cuffdiff written 4.3 years ago by Assa Yeroslaviz • 1.4k

votes

answers

1.4k

views

answers

Incongruencies between DEXSeq and BitSeq/Cuffdiff

dexseq bitseq isoforms cuffdiff differential exon usage written 4.4 years ago by elle • 10

votes

answer

972

views

answer

How many 'expressed genes' do I have in my dataset?

deseq2 cuffdiff written 4.4 years ago by a.de-giorgio12 • 0 • updated 4.4 years ago by Michael Love ♦ 25k

votes

answers

876

views

answers

Help with cummeRbund

rnaseq cummerbund script analysis cuffdiff written 4.5 years ago by mfahim • 0 • updated 4.5 years ago by andrew.j.skelton73 • 320