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Terra / AnVIL R / Bioconductor Popup Workshops
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just now
shepherl
2.6k
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News:
Bioconductor Release 3.12 and Bioconductor Devel 3.13 Code Freeze Deadlines!
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1 minute ago
shepherl
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5
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Duplicate row.names when building SummarizedExperiment with make_se in DEP
DEP
42 minutes ago
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▴ 20
0
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0
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10
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Job:
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3 hours ago
Daphne
• 0
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1
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16
views
TargetsFile. Where it is?
Limma
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updated 39 minutes ago by
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▴ 60 • written 3 hours ago by
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3 hours ago
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1
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1
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30
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simplifyEnrichment install error
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updated 41 minutes ago by
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2.6k • written 5 hours ago by
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2
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67
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Couldn't load org.Hs.eg.db
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10 hours ago • updated 5 hours ago
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• 0
2
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2
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41
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Using DESeq2 to identify changing transcriptional activity in a metagenome
Metagenomics
DESeq2
Metatranscriptomics
23 hours ago • updated 5 hours ago
Tom
• 0
0
votes
0
replies
20
views
between and within subjects design with batch correction
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12 hours ago • updated 11 hours ago
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0
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54
views
Problem with estimateSizeFactors due to avgTxLength
DESeq2
18 hours ago • updated 11 hours ago
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• 0
24
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18
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706
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.onLoad failed in loadNamespace() for 'org.Hs.eg.db'
org.Hs.eg.db
pathview
updated 11 hours ago by
Michelle
• 0 • written 2 days ago by
Arun
▴ 120
0
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0
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23
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News:
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23 hours ago
shepherl
2.6k
0
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20
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News:
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1 day ago
shepherl
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16
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1 day ago
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1
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36
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Does DESeq2 need "scale_counts" for GTEx and TCGA data from recount2 (TCGAquery_recount2)?
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updated 1 day ago by
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32k • written 1 day ago by
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▴ 20
0
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26
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Query regarding edgeR and limma
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1 day ago
abhisekdey061
• 0
0
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2
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41
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updated 1 day ago by
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32k • written 1 day ago by
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0
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0
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31
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shinyMethyl issue when using combinedArrays() from minfi - Error in object@greenControls[[i]][, o] : incorrect number of dimensions
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1 day ago
jefflincoln4
• 0
3
votes
3
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65
views
DESeq2 two conditions with interaction
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updated 18 hours ago by
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2.7k • written 1 day ago by
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0
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2
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235
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News:
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4 months ago • updated 1 day ago
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4
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68
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Fitting a continuous variable with batch effect using Limma. Also a question about normalization.
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2 days ago • updated 1 day ago
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• 0
0
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0
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17
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News:
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1 day ago
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0
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17
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What is the definition of flank_gene_distances output field in ChIPseeker
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1 day ago
Sam
▴ 10
0
votes
1
reply
49
views
DEseq2 to test half-life for time-series data
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updated 2 days ago by
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32k • written 4 days ago by
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0
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3
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80
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4 days ago • updated 1 day ago
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4
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90
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2 days ago
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1
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2
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26 days ago • updated 2 days ago
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22
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4 days ago • updated 2 days ago
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3
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61
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NChannelSet --> eSet/expressionSet ? How to transform?
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updated 2 days ago by
Gordon Smyth
42k • written 3 days ago by
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0
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1
reply
46
views
Microarray: Build annotation for HT MG430PM affymetrix
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affymetrix
updated 2 days ago by
Guido Hooiveld
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4
votes
4
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74
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How to save multiple assays and subsequent processed data in single SummarizedExperiment Object
SummarizedExperiment
updated 2 days ago by
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1.5k • written 3 days ago by
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0
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0
replies
218
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Job:
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63
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3 days ago
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2
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2
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62
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RSamtools idxstats does not return unmapped reads
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4 days ago • updated 3 days ago
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2
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68
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RSamtools idxstatsBam not working with remote bam file
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Running > 100 samples per group - memory issues
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4 days ago
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0
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29
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CAGEexp vs CAGErseq
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4 days ago
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2
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1
reply
40
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Retrieve gene description with ensembldb
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AnnotationData
updated 4 days ago by
Johannes Rainer
★ 1.9k • written 5 days ago by
António Miguel de Jesus Domingues
▴ 480
0
votes
2
replies
63
views
Outliers
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5 days ago • updated 4 days ago
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0
votes
0
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28
views
Gviz: set colors for UTRs
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Gviz
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5 days ago
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• 0
0
votes
1
reply
38
views
Error in read.table function using multiclust
multiClust
updated 5 days ago by
Kevin Blighe
2.7k • written 5 days ago by
Debashis
• 0
0
votes
1
reply
42
views
log transformation the eset
codelink
updated 5 days ago by
Kevin Blighe
2.7k • written 5 days ago by
Yuxiii
• 0
3
votes
3
replies
122
views
Query regarding Differential gene expression analysis
limma
edgeR
DESeq2
6 days ago • updated 5 days ago
abhisekdey061
• 0
1
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4
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129
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TCGA data analysis
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5 days ago
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11
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286
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How to setup sample design in DESeq2
DESeq2
written 7 weeks ago by
dequattro.concetta
▴ 10
0
votes
0
replies
44
views
Range value of the dispersion parameters (a1, alpha 0 and sigmad)
dispersion
DESeq2
polyester
6 days ago
catalina.gonzalez-gomez
• 0
2
votes
4
replies
79
views
BSGenome Forge for non-model organism
BSGenomeForge
BSGenome
updated 5 days ago by
Hervé Pagès
14k • written 6 days ago by
sieminsk
• 0
40,543 results • Page
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Comment: TargetsFile. Where it is?
by
Basti
▴ 60
Hi, I think for this dataset you will have to create the targets file yourself. The information you need is contained in the series matrix …
Answer: simplifyEnrichment install error
by
shepherl
2.6k
Not using default Bioconductor repositories since simplifyEnrichment was only added to Bioconductor release 3.12; The package would not be …
Comment: Couldn't load org.Hs.eg.db
by
Chen
• 0
Thanks a lot
Comment: Using DESeq2 to identify changing transcriptional activity in a metagenome
by
Tom
• 0
Thank you for your answer and especially for pointing me into the direction of zinbwave and the issue of zero inflation. I will look into …
Answer: Couldn't load org.Hs.eg.db
by
Charlotte Soneson
▴ 130
If this is happening in RStudio, it is likely an issue with the current version of `RSQLite`. See * [https://github.com/rstudio/rstudio…
Votes
Answer: simplifyEnrichment install error
Answer: .onLoad failed in loadNamespace() for 'org.Hs.eg.db'
.onLoad failed in loadNamespace() for 'org.Hs.eg.db'
A: DESeq2 model with covariates
Answer: Retrieve gene description with ensembldb
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