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Comment: Genelist input for ClusterProfiler
by
Sofia
• 0
Hi Kevin, the input of gseKEGG is the same input of gseGO? I appreciate any help
Answer: error in ChAMP loading file
by
francis10bacon
• 0
Confirm that the IDAT files are in the correct directory and follow the required naming convention. Make sure the IDAT files are compatible…
Comment: Interpret plot from DiffBind
by
Chris
• 0
I sorted Fold decreasing. When I filter out genes with fold > 2.5 and filter out genes with fold < -2.5 and got 1287 genes appear in both s…
Comment: Interpret plot from DiffBind
by
Chris
• 0
Thank you so much. I think the function is `dba.report()`. more_open_in_disease: 79113 more_closed_in_disease: 36828 So there are 79113 pea…
Comment: Interpret plot from DiffBind
by
Chris
• 0
Hi Rory, when I run your code, I got this error: Error: unexpected ')' in: " matrices_color=list(c("white", "ma…
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A: Renaming the seqlevels in a transcript database from GenomicFeatures
A: ggbio error: Objects of type OrganismDb not supported by autoplot
Answer: DeSEQ 2 Error: some values in assay are negative
DESeq2 Error from Installing a Package
Answer: Using PEER to identify hidden confounders in RNA-seq data (not working)
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