0
votes
1
answer
168
views
1
answer
name of column in R
deseq htsfilter software error columns metarnaseq written 7 months ago by ed_isfahani0 • updated 7 months ago by Wolfgang Huber13k
18
votes
4
answers
5.4k
views
4
answers
DESeq2 for ChIP-seq differential peaks
chipseq deseq deseq2 written 2.4 years ago by tangming200590 • updated 7 months ago by k.vitting.seerup20
4
votes
1
answer
314
views
1
answer
6
votes
3
answers
3.7k
views
3
answers
Confused in the usage of formula in DESeq or DESeq2
deseq deseq2 written 3.3 years ago by skyoflcz10 • updated 8 months ago by bio200160
1
vote
1
answer
278
views
1
answer
DESeq2 - selective calculation of differential gene expression
deseq deseq2 written 8 months ago by LilithElina0 • updated 8 months ago by Michael Love16k
0
votes
3
answers
755
views
3
answers
normalization factors for ChIP/RNA-IP-seq data
edger deseq written 6.1 years ago by mali salmon320 • updated 9 months ago by gaxusoh0
5
votes
3
answers
433
views
3
answers
P values from Deseq Analysis
deseq written 9 months ago by spawar20
6
votes
1
answer
370
views
1
answer
DESeq2: interaction term as in limma
limma deseq deseq2 interaction term written 9 months ago by sbcn50 • updated 9 months ago by Simon Anders3.4k
5
votes
2
answers
339
views
2
answers
3
votes
1
answer
991
views
1
answer
standard error value (lfcSE) returned by DeSeq2
deseq deseq2 standard error lfc lfcse written 11 months ago by tootiki0 • updated 10 months ago by rraadd_80
1
vote
1
answer
259
views
1
answer
diffHiC with no biological replicates?
deseq glm diffhic estimate dispersion value no replicates written 10 months ago by hwick110 • updated 10 months ago by Aaron Lun18k
3
votes
1
answer
318
views
1
answer
5
votes
1
answer
1.1k
views
1
answer
What problem does the MA plot diagnose? And how do you solve it?
rnaseq deseq deseq2 written 11 months ago by ysdel30 • updated 11 months ago by Ryan C. Thompson6.3k
1
vote
1
answer
556
views
1
answer
0
votes
1
answer
322
views
1
answer
DESeq pvalue & padj
deseq written 12 months ago by manoharankumar010 • updated 12 months ago by Gavin Kelly550
0
votes
0
answers
283
views
0
answers
0
votes
1
answer
362
views
1
answer
How to remove genes with 0 counts in tximport?
deseq deseq2 tximport tximportdata written 12 months ago by Peter Alto10 • updated 12 months ago by Michael Love16k
0
votes
0
answers
251
views
0
answers
DESeq: How are condition A and B assigned
deseq R written 12 months ago by arielle0
1
vote
2
answers
332
views
2
answers
0
votes
2
answers
2.3k
views
2
answers
DESeq2 multiple factors nested design
deseq deseq2 written 3.9 years ago by Guest User12k • updated 13 months ago by blawney0
0
votes
1
answer
204
views
1
answer
how to change color of points log2foldchange>1
deseq written 14 months ago by 130277160620 • updated 14 months ago by Wolfgang Huber13k
0
votes
1
answer
557
views
1
answer
Estimating group-specific dispersion in DESeq2
deseq deseq2 estimatedispersions written 15 months ago by bkellman0 • updated 15 months ago by Michael Love16k
2
votes
1
answer
342
views
1
answer
DESeq2 multifactor test using batch as one of the factor
deseq deseq2 written 16 months ago by vd4mmind0 • updated 16 months ago by Michael Love16k
0
votes
2
answers
1.4k
views
2
answers
2
votes
5
answers
359
views
5
answers
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