5
votes
1
answer
783
views
1
answer
What problem does the MA plot diagnose? And how do you solve it?
rnaseq deseq deseq2 written 8 months ago by ysdel30 • updated 8 months ago by Ryan C. Thompson6.1k
1
vote
1
answer
416
views
1
answer
0
votes
1
answer
253
views
1
answer
DESeq pvalue & padj
deseq written 9 months ago by manoharankumar010 • updated 9 months ago by Gavin Kelly510
0
votes
0
answers
235
views
0
answers
0
votes
1
answer
307
views
1
answer
How to remove genes with 0 counts in tximport?
deseq deseq2 tximport tximportdata written 9 months ago by Peter Alto0 • updated 9 months ago by Michael Love15k
0
votes
0
answers
222
views
0
answers
1
vote
2
answers
284
views
2
answers
0
votes
2
answers
2.2k
views
2
answers
DESeq2 multiple factors nested design
deseq deseq2 written 3.7 years ago by Guest User12k • updated 10 months ago by blawney0
0
votes
1
answer
187
views
1
answer
how to change color of points log2foldchange>1
deseq written 11 months ago by 130277160620 • updated 11 months ago by Wolfgang Huber13k
0
votes
1
answer
476
views
1
answer
Estimating group-specific dispersion in DESeq2
deseq deseq2 estimatedispersions written 12 months ago by bkellman0 • updated 12 months ago by Michael Love15k
2
votes
1
answer
311
views
1
answer
DESeq2 multifactor test using batch as one of the factor
deseq deseq2 written 14 months ago by vd4mmind0 • updated 14 months ago by Michael Love15k
0
votes
2
answers
1.2k
views
2
answers
2
votes
5
answers
338
views
5
answers
3
votes
2
answers
613
views
2
answers
Labeling points with hgnc symbols on the MA plot in DESeq2
deseq ma written 16 months ago by spark270 • updated 15 months ago by phil.chapman120
0
votes
1
answer
289
views
1
answer
DESeq outlier detection for unbalanced groups
deseq deseq2 outliers written 16 months ago by akaever30 • updated 16 months ago by Michael Love15k
2
votes
2
answers
655
views
2
answers
0
votes
2
answers
930
views
2
answers
Repeated Measures mRNA expression analysis II
limma edger deseq written 4.4 years ago by Charles Determan Jr140 • updated 16 months ago by wei.x.30
0
votes
2
answers
265
views
2
answers
DESeq2 with paired data
deseq written 17 months ago by l.weissenburgermoser0
0
votes
2
answers
1.1k
views
2
answers
Use surrogate variables on DESeq2
deseq sva deseq2 differential gene expression written 2.3 years ago by aristotele_m10 • updated 17 months ago by szenitha0
1
vote
1
answer
784
views
1
answer
3
votes
1
answer
551
views
1
answer
3
votes
1
answer
389
views
1
answer
read counts of paired end reads for DESeq2 analysis
deseq featurecounts paired written 19 months ago by tszn19840 • updated 19 months ago by Steve Lianoglou12k
2
votes
1
answer
309
views
1
answer
4
votes
3
answers
1.3k
views
3
answers
Error bars DESeq or DESeq2 fold change
rnaseq deseq deseq2 confidence interval standard error written 19 months ago by lisa.crossman0 • updated 19 months ago by Simon Anders3.4k
1
vote
1
answer
2.2k
views
1
answer
Difference between DESeq and DESeq2
deseq deseq2 nbionormtest written 19 months ago by ghk0 • updated 19 months ago by Simon Anders3.4k
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