4
votes
2
answers
271
views
2
answers
0
votes
1
answer
304
views
1
answer
9
votes
2
answers
603
views
2
answers
0
votes
1
answer
764
views
1
answer
0
votes
1
answer
721
views
1
answer
Linear regression in DESeq2
deseq written 10 months ago by chimeric0 • updated 10 months ago by Michael Love17k
3
votes
3
answers
682
views
3
answers
DESeq function taking too long
rnaseq deseq deseq2 factor written 10 months ago by sup23010 • updated 10 months ago by Peter Langfelder1.4k
0
votes
1
answer
200
views
1
answer
name of column in R
deseq htsfilter software error columns metarnaseq written 10 months ago by ed_isfahani0 • updated 10 months ago by Wolfgang Huber13k
18
votes
4
answers
6.0k
views
4
answers
DESeq2 for ChIP-seq differential peaks
chipseq deseq deseq2 written 2.7 years ago by tangming200590 • updated 10 months ago by k.vitting.seerup20
4
votes
1
answer
550
views
1
answer
6
votes
3
answers
4.2k
views
3
answers
Confused in the usage of formula in DESeq or DESeq2
deseq deseq2 written 3.6 years ago by skyoflcz10 • updated 11 months ago by bio200160
1
vote
1
answer
328
views
1
answer
DESeq2 - selective calculation of differential gene expression
deseq deseq2 written 11 months ago by LilithElina0 • updated 11 months ago by Michael Love17k
0
votes
3
answers
831
views
3
answers
normalization factors for ChIP/RNA-IP-seq data
edger deseq written 6.4 years ago by mali salmon320 • updated 12 months ago by gaxusoh0
5
votes
3
answers
558
views
3
answers
P values from Deseq Analysis
deseq written 12 months ago by spawar20
6
votes
1
answer
492
views
1
answer
DESeq2: interaction term as in limma
limma deseq deseq2 interaction term written 13 months ago by sbcn50 • updated 13 months ago by Simon Anders3.5k
5
votes
2
answers
424
views
2
answers
3
votes
1
answer
1.3k
views
1
answer
standard error value (lfcSE) returned by DeSeq2
deseq deseq2 standard error lfc lfcse written 14 months ago by tootiki0 • updated 13 months ago by rraadd_80
2
votes
1
answer
311
views
1
answer
diffHiC with no biological replicates?
deseq glm diffhic estimate dispersion value no replicates written 14 months ago by hwick120 • updated 14 months ago by Aaron Lun19k
3
votes
1
answer
372
views
1
answer
5
votes
1
answer
1.6k
views
1
answer
What problem does the MA plot diagnose? And how do you solve it?
rnaseq deseq deseq2 written 15 months ago by ysdel30 • updated 15 months ago by Ryan C. Thompson6.7k
1
vote
1
answer
723
views
1
answer
0
votes
1
answer
438
views
1
answer
DESeq pvalue & padj
deseq written 15 months ago by manoharankumar010 • updated 15 months ago by Gavin Kelly550
0
votes
0
answers
353
views
0
answers
0
votes
1
answer
440
views
1
answer
How to remove genes with 0 counts in tximport?
deseq deseq2 tximport tximportdata written 15 months ago by Peter Alto10 • updated 15 months ago by Michael Love17k
0
votes
0
answers
307
views
0
answers
DESeq: How are condition A and B assigned
deseq R written 16 months ago by arielle0
1
vote
2
answers
381
views
2
answers
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