3
votes
1
answer
10k
views
1
answer
DESeq2 output explanation
deseq deseq2 written 3.0 years ago by francesca.defilippis40 • updated 3.0 years ago by Michael Love15k
0
votes
2
answers
7.2k
views
2
answers
DESeq - plotPCA
deseq written 4.7 years ago by Guest User12k • updated 4.7 years ago by Simon Anders3.4k
0
votes
2
answers
6.8k
views
2
answers
DESeq2 basemean and log2foldchange
deseq written 3.3 years ago by rob yang50 • updated 3.3 years ago by Michael Love15k
0
votes
2
answers
6.1k
views
2
answers
Applying DESeq on RSEM output
edger deseq written 4.7 years ago by dvir.tau@gmail.com30 • updated 4.7 years ago by Simon Anders3.4k
0
votes
1
answer
5.8k
views
1
answer
Normalization by DEseq
genetics normalization deseq written 7.1 years ago by Rui Luo20 • updated 7.1 years ago by Wolfgang Huber13k
2
votes
2
answers
4.9k
views
2
answers
DESeq2: Paired Test
deseq deseq2 written 3.6 years ago by Pankaj Agarwal100
5
votes
2
answers
4.9k
views
2
answers
0
votes
1
answer
4.8k
views
1
answer
Using DESeq normalized gene count to replace FPKM?
visualization deseq written 4.3 years ago by Jike Cui10 • updated 4.3 years ago by Simon Anders3.4k
18
votes
4
answers
4.8k
views
4
answers
DESeq2 for ChIP-seq differential peaks
chipseq deseq deseq2 written 2.2 years ago by tangming200590 • updated 4 months ago by k.vitting.seerup10
1
vote
2
answers
4.4k
views
2
answers
1
vote
1
answer
4.1k
views
1
answer
With DESeq2 "Not full rank" Error with design ~ line + time + condition
deseq deseq2 written 2.8 years ago by c.lieftink@nki.nl20 • updated 2.8 years ago by Michael Love15k
2
votes
1
answer
3.8k
views
1
answer
Normalization in DESeq2
deseq deseq2 written 2.9 years ago by solgakar@bi.technion.ac.il50 • updated 2.9 years ago by Michael Love15k
0
votes
2
answers
3.6k
views
2
answers
DESeq adjusted pvalue calculation / filtering data
sequencing organism qvalue deseq written 6.0 years ago by Markus Grohme20 • updated 6.0 years ago by Naomi Altman6.0k
4
votes
1
answer
3.6k
views
1
answer
Analyzing RNA-Seq data without replicates using DESeq
deseq deseq2 written 3.2 years ago by solgakar@bi.technion.ac.il50 • updated 3.2 years ago by Michael Love15k
0
votes
1
answer
3.4k
views
1
answer
rtracklayer importing gtf files
rtracklayer deseq genomicranges written 4.6 years ago by Guest User12k • updated 4.6 years ago by Michael Lawrence9.8k
1
vote
5
answers
3.3k
views
5
answers
2
votes
0
answers
3.2k
views
0
answers
6
votes
3
answers
3.2k
views
3
answers
Confused in the usage of formula in DESeq or DESeq2
deseq deseq2 written 3.1 years ago by skyoflcz10 • updated 5 months ago by bio200160
0
votes
1
answer
3.2k
views
1
answer
edgeR vs DESeq for comparison without replicate
edger deseq written 6.4 years ago by Woo, Sangsoon20 • updated 6.4 years ago by Davis McCarthy260
2
votes
3
answers
3.1k
views
3
answers
25
votes
2
answers
3.1k
views
2
answers
Normalization methodology in DESeq/DESeq2 vs edgeR
normalization edger deseq deseq2 written 2.0 years ago by Nik Tuzov60 • updated 2.0 years ago by Simon Anders3.4k
2
votes
1
answer
3.0k
views
1
answer
Estimation of dispersion in DeSeq and DeSeq2
rnaseq deseq deseq2 written 3.0 years ago by JK10 • updated 3.0 years ago by Michael Love15k
0
votes
2
answers
2.9k
views
2
answers
DeSeq vs current version of Cuffdiff
sequencing bayesian cancer deseq written 5.8 years ago by Richard Friedman2.0k • updated 5.8 years ago by Stephen Turner260
2
votes
3
answers
2.8k
views
3
answers
DESeq2 Error in estimateSizeFactorsForMatrix
sequencing alignment deseq deseq2 written 3.5 years ago by Guest User12k • updated 2.5 years ago by gaelgarcia0
0
votes
1
answer
2.5k
views
1
answer
DESeq Variance Stabilizing Transformation
clustering deseq deseq2 written 4.5 years ago by Hickman, R.J. Richard50 • updated 4.5 years ago by Michael Love15k
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