8
votes
1
answer
20k
views
8 follow
1
answer
DESeq2 output explanation
deseq deseq2 written 4.1 years ago by francesca.defilippis60 • updated 4.1 years ago by Michael Love20k
2
votes
1
answer
11k
views
1
answer
Normalization in DESeq2
deseq deseq2 written 4.0 years ago by solgakar@bi.technion.ac.il60 • updated 4.0 years ago by Michael Love20k
0
votes
2
answers
9.8k
views
2
answers
DESeq - plotPCA
deseq written 5.8 years ago by Guest User12k • updated 5.8 years ago by Simon Anders3.5k
0
votes
2
answers
9.5k
views
2
answers
Normalization by DEseq
genetics normalization deseq written 8.2 years ago by Rui Luo20 • updated 9 months ago by diannedai0
0
votes
2
answers
9.2k
views
2
answers
DESeq2 basemean and log2foldchange
deseq written 4.4 years ago by rob yang50 • updated 4.4 years ago by Michael Love20k
0
votes
2
answers
7.8k
views
2
answers
Applying DESeq on RSEM output
edger deseq written 5.7 years ago by dvir.tau@gmail.com30 • updated 5.7 years ago by Simon Anders3.5k
18
votes
4
answers
7.3k
views
4
answers
DESeq2 for ChIP-seq differential peaks
chipseq deseq deseq2 written 3.3 years ago by tangming200590 • updated 17 months ago by k.vitting.seerup30
2
votes
2
answers
7.2k
views
2
answers
DESeq2: Paired Test
deseq deseq2 written 4.7 years ago by Pankaj Agarwal100
1
vote
1
answer
7.2k
views
1
answer
With DESeq2 "Not full rank" Error with design ~ line + time + condition
deseq deseq2 written 3.9 years ago by c.lieftink@nki.nl20 • updated 3.9 years ago by Michael Love20k
10
votes
2
answers
6.9k
views
6 follow
2
answers
0
votes
1
answer
6.2k
views
1
answer
Using DESeq normalized gene count to replace FPKM?
visualization deseq written 5.4 years ago by Jike Cui10 • updated 5.4 years ago by Simon Anders3.5k
1
vote
5
answers
5.7k
views
5
answers
2
votes
2
answers
5.7k
views
2
answers
0
votes
2
answers
5.4k
views
2
answers
DESeq adjusted pvalue calculation / filtering data
sequencing organism qvalue deseq written 7.1 years ago by Markus Grohme20 • updated 7.1 years ago by Naomi Altman6.0k
5
votes
3
answers
5.3k
views
5 follow
3
answers
6
votes
3
answers
5.2k
views
3
answers
Confused in the usage of formula in DESeq or DESeq2
deseq deseq2 written 4.1 years ago by skyoflcz10 • updated 18 months ago by bio200160
4
votes
1
answer
5.2k
views
1
answer
Analyzing RNA-Seq data without replicates using DESeq
deseq deseq2 written 4.2 years ago by solgakar@bi.technion.ac.il60 • updated 4.2 years ago by Michael Love20k
2
votes
1
answer
4.9k
views
1
answer
Estimation of dispersion in DeSeq and DeSeq2
rnaseq deseq deseq2 written 4.1 years ago by JK10 • updated 4.1 years ago by Michael Love20k
0
votes
1
answer
4.8k
views
1
answer
edgeR vs DESeq for comparison without replicate
edger deseq written 7.4 years ago by Woo, Sangsoon20 • updated 7.4 years ago by Davis McCarthy260
2
votes
0
answers
4.4k
views
0
answers
25
votes
2
answers
4.3k
views
2
answers
Normalization methodology in DESeq/DESeq2 vs edgeR
normalization edger deseq deseq2 written 3.1 years ago by Nik Tuzov70 • updated 3.1 years ago by Simon Anders3.5k
0
votes
1
answer
4.3k
views
1
answer
rtracklayer importing gtf files
rtracklayer deseq genomicranges written 5.7 years ago by Guest User12k • updated 5.7 years ago by Michael Lawrence10k
0
votes
2
answers
4.2k
views
2
answers
DeSeq vs current version of Cuffdiff
sequencing bayesian cancer deseq written 6.8 years ago by Richard Friedman2.0k • updated 6.8 years ago by Stephen Turner260
4
votes
1
answer
4.1k
views
1
answer
how DESeq calculates p-value ?
deseq statistics differential gene expression p-value written 2.8 years ago by Giard10 • updated 2.8 years ago by Ryan C. Thompson7.1k
1
vote
1
answer
4.1k
views
1
answer
how to get normalized counts from edgeR
deseq written 6.4 years ago by wang peter2.0k • updated 6.4 years ago by Mark Robinson870
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