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[deseq2] normalization between samples after merging transcripts into genes
deseq2 tximport written 4 hours ago by marie • 0
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3
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Hill shape p-value histogram after differential miRNA expression analysis with DESeq2
mirna deseq2 fdrtool written 11 hours ago by L_K • 0 • updated 6 hours ago by Robert Castelo • 2.3k
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DESeq2 w. pathway/network info as a prior knowledge
deseq2 pathway differential expression written 5 days ago by guidobarzaghi • 0 • updated 7 hours ago by Michael Love ♦ 22k
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Deseq2 padjusted values versus pvalue
rnaseq deseq2 padjusted written 12 hours ago by tanyabioinfo • 20 • updated 11 hours ago by Michael Love ♦ 22k
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clarification of time-series analysis
deseq2 lrt baseline written 13 hours ago by Assa Yeroslaviz • 1.4k • updated 13 hours ago by Michael Love ♦ 22k
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Time-series analysis with DESeq2
edger deseq2 design matrix time-series written 14 hours ago by Assa Yeroslaviz • 1.4k • updated 13 hours ago by Michael Love ♦ 22k
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Differences in contrast results while using DESeq2 for one vs all rest combined conditions
deseq2 rna-seq differential expression analysis written 1 day ago by shreygandhi1990 • 0
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Using RUVSeq RUVs() to perform batch correction using technical replicates
deseq2 ruvseq ruvs written 3 days ago by enricoferrero • 570 • updated 1 day ago by Gordon Smyth ♦ 36k
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Random Effect in DESeq2
deseq2 written 1 day ago by susana.amaral.teixeira • 0
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DESeq2:varianceStabilizingTransformation suggested. Results suspicious
deseq2 written 5 days ago by jovel_juan • 10
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DESeq2: RNA-Seq time series analysis after removal of batch effect
deseq2 time series remove batch effect written 1 day ago by Nicola • 0
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RNA-seq batch correction using technical replicates profiled across batches
limma edger sva deseq2 ruvseq written 2 days ago by enricoferrero • 570 • updated 1 day ago by Gordon Smyth ♦ 36k
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tximport: question concerning 'bias corrected counts without an offset' method
deseq2 tximport written 4 days ago by Thomas Bradley • 0 • updated 4 days ago by Michael Love ♦ 22k
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edgeR /DESeq2 normalization for differential expression in RNA-seq blood samples
rnaseq normalization edger deseq2 hemoglobin written 4 days ago by aec • 40 • updated 4 days ago by Ryan C. Thompson ♦ 7.2k
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Data filtering in DESeq2
deseq2 data filtering written 4 days ago by sally.badawi • 0 • updated 4 days ago by Michael Love ♦ 22k
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DESeq2 overestimates log2Fold Change
deseq2 written 4 days ago by marcomhefti • 0 • updated 4 days ago by James W. MacDonald ♦ 49k
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differentail expression analysis with interaction terms
edger deseq2 design matrix interaction written 4 days ago by Assa Yeroslaviz • 1.4k • updated 4 days ago by James W. MacDonald ♦ 49k
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LRT test followed by filtering based on LFC
deseq2 lrt lfc written 4 days ago by sally.badawi • 0 • updated 4 days ago by Michael Love ♦ 22k
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40
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Summary results interpretation in DeSeq2
deseq2 written 4 days ago by sharmila.ahmad • 0 • updated 4 days ago by Michael Love ♦ 22k
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Does IHW use the supplied alpha for the correction calculations?
deseq2 ihw written 5 days ago by k.vitting.seerup • 60 • updated 4 days ago by Nikos Ignatiadis • 160
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DESeq2: paired samples + controls
deseq2 written 5 days ago by guidobarzaghi • 0 • updated 5 days ago by Michael Love ♦ 22k
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DESeq2: 5 Conditions (B vs C) vs (D vs B)
deseq2 contrast ratio of ratio written 5 days ago by Fischer-philipp • 0 • updated 5 days ago by Michael Love ♦ 22k
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design for DEseq2: LRT vs Wald & interactions
deseq2 written 6 days ago by cintapq • 10 • updated 6 days ago by Michael Love ♦ 22k
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Appropriate design formula for DESeq2 from principles
deseq2 written 7 days ago by galen.seilis • 0 • updated 6 days ago by Michael Love ♦ 22k
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[Resolved] RcppArmadillo pckg ERRORS : non-zero exit status (and so DESeq2 also)
deseq2 linux R rcpparmadillo written 6 days ago by RS1 • 0
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