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1
answer
25
views
1
answer
DESeq2 ddsHTSeq error
deseq2 written 12 hours ago by Matthew McCormack • 160 • updated 10 hours ago by Michael Love ♦ 12k
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1
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70
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1
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DESeq2- what to do when two conditions share controls?
deseq2 written 1 day ago by grashow • 0
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1
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45
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1
answer
deseq2 course experiment
deseq2 written 1 day ago by riccardo • 30 • updated 22 hours ago by Michael Love ♦ 12k
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1
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33
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1
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DESeq2: Tests of log2 differences
transcription deseq2 rna-seq dgea written 1 day ago by fabian • 10 • updated 1 day ago by Michael Love ♦ 12k
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1
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46
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1
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DESeq2 minReplicatesForReplace with different group size
deseq2 written 2 days ago by Jane Merlevede • 80
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1
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32
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1
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DESeq2 rlogTransformation error
deseq2 written 1 day ago by helen.cwp • 0 • updated 1 day ago by Michael Love ♦ 12k
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1
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102
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1
answer
Complicated paired multi factor design
deseq2 multiple factor design written 9 days ago by Vladimir Krasikov • 80
2
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3
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203
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6 follow
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New function lfcShrink() in DESeq2
deseq2 written 17 days ago by Michael Love ♦ 12k • updated 2 days ago by qimaera • 0
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1
answer
64
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1
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Differential expression after different normalization methods
deseq2 differential expression written 4 days ago by tarakaramji • 0 • updated 3 days ago by Michael Love ♦ 12k
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1
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60
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1
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deseq2 outliers problems
deseq2 written 4 days ago by aristotele_m • 10
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1
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62
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1
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Get specifically DE genes per each condition and Log2FC(B/A) vs Log2FC(C/A) DEseq2
deseq2 written 9 days ago by ccortes • 0 • updated 8 days ago by Michael Love ♦ 12k
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1
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84
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1
answer
DESeq2 Multiple Variable Nested Design
deseq2 multiple factor design nested design interaction term written 9 days ago by zahra.aboukhalil • 0 • updated 8 days ago by Michael Love ♦ 12k
3
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3
answers
223
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3
answers
Skip estimateDispersions() DESeq2
deseq2 estimatedispersions written 11 months ago by nicky.driedonks • 0 • updated 9 days ago by vulegom • 0
0
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1
answer
77
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1
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Using Combat function of SVA to remove known batch effect and using the result for down-stream analysis
edger sva deseq2 batch effect written 10 days ago by littlefishes20 • 0 • updated 10 days ago by Aaron Lun • 14k
1
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1
answer
73
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1
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DESeq2 time-series data of multiple treatments with common time 0
deseq2 multiple time points multiple treatments written 10 days ago by Ting • 0 • updated 10 days ago by Michael Love ♦ 12k
2
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1
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78
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1
answer
check splice isoforms
deseq2 tximport written 12 days ago by ry82722 • 0 • updated 10 days ago by Michael Love ♦ 12k
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1
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94
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1
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DESeq2 DESeqDataSetFromTximport design formula
deseq2 written 12 days ago by stephensmith • 0 • updated 11 days ago by sina.nassiri • 40
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1
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83
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1
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DESeq2 independent filtering not working
deseq2 independent filtering cookscutoff written 14 days ago by tamsyn.derrick • 0
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1
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77
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1
answer
Three factor model matrix, contrasts with interactions - DESeq2 / edgeR
edger deseq2 multifactorial design limma voom written 14 days ago by Alan Smith • 130 • updated 13 days ago by Michael Love ♦ 12k
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3
answers
113
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3
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DESeq2 extracting results: resultsNames does not show the expected output
rnaseq deseq2 resultsnames written 23 days ago by zeynep.nenseth • 0
1
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1
answer
88
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1
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Clarification requested for the RNAseq Gene workflow document
rnaseq deseq2 written 14 days ago by lina.faller • 0 • updated 14 days ago by Michael Love ♦ 12k
0
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1
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78
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1
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Fundamental questions about DESeq2 and RUVs in targeted gene set of 500
deseq2 ruvseq written 14 days ago by grashow • 0 • updated 14 days ago by davide risso • 350
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1
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80
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1
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DESeq2 output with multiple Ensembl Gene Names per row, how to resolve?
rnaseq deseq2 ensembl written 14 days ago by Nicholas Owen • 0 • updated 14 days ago by Michael Love ♦ 12k
1
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2
answers
94
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2
answers
topGO gene names/ensembl IDs
biomart topgo deseq2 gene ontology written 15 days ago by krc3004 • 10 • updated 15 days ago by Lluís R • 210
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1
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101
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1
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Multiple comparisons for DE analysis with DESeq2
deseq2 differential expression experimental design mirna-seq written 16 days ago by francesco.gandolfi • 0 • updated 15 days ago by Gavin Kelly • 180
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