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1
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1
answer
33
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1
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The calculation of regularized logarithm
rnaseq deseq2 written 18 hours ago by Yuya Liang • 0 • updated 18 hours ago by Michael Love ♦ 18k
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34
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1
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DESeq2 - how to build design for matched case-control study with repeated measurement
deseq2 written 1 day ago by 183227851 • 0 • updated 20 hours ago by Michael Love ♦ 18k
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Deseq2 problem visualizing gene expression with batch corrected values
visualization limma deseq2 differential expression written 21 hours ago by Mbosio85 • 0
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25
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2x2 design - UP means more expression on S than R and DOWN less expression on S than R?
deseq2 2x2 written 1 day ago by filipematias23 • 0 • updated 21 hours ago by Michael Love ♦ 18k
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40
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DESeq2 for Ribosomal profiling analysis [two-factor designs]
deseq2 ribosome profiling written 1 day ago by xiaozhuo • 0 • updated 1 day ago by Michael Love ♦ 18k
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40
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1
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DESEQ2 Default Value for Cooks Distance cutoff
deseq2 written 2 days ago by wpoehlm • 0 • updated 1 day ago by Michael Love ♦ 18k
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43
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Deseq2 within samples variability
deseq2 within variability samples written 5 days ago by sally_b86 • 0 • updated 2 days ago by shepherl ♦♦ 620
4
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1
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61
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1
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Get release date for version of DESeq2
deseq2 R written 2 days ago by thibault.lorin34 • 20 • updated 2 days ago by Michael Love ♦ 18k
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1
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46
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1
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Compare effect size of gene (lfcShrink or not)
rnaseq deseq2 written 2 days ago by Yuya Liang • 0 • updated 2 days ago by Michael Love ♦ 18k
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1
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42
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DESeq2 Subsetting gives error in contrasts - can be applied only to factors with 2 or more levels
deseq2 contrast multiple factor design written 3 days ago by russell.stewart.j • 0
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1
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40
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1
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non-integer counts in DESeq2
deseq2 differential gene expression written 3 days ago by warrena • 0 • updated 3 days ago by Michael Love ♦ 18k
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1
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46
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1
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DESeq2 significative fold change when both groups have no reads
deseq2 written 3 days ago by Charles Joly Beauparlant • 160 • updated 3 days ago by Michael Love ♦ 18k
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1
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48
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very different DESeq2 results between two versions
rnaseq deseq2 written 3 days ago by sven.schenk • 10
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35
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Model matrix not full rank
deseq2 batch effect model matrix not full rank written 4 days ago by sally.badawi • 0 • updated 3 days ago by Michael Love ♦ 18k
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1
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55
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Interpreting results of sample-to-sample PCA/clustering and changing assignment of condition levels
deseq2 written 4 days ago by fl • 0
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2
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52
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Is circular RNA read out as linear fragments during Rsubread-DESeq2
rsubread deseq2 circrna written 5 days ago by csijst • 0 • updated 4 days ago by Wei Shi • 2.8k
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48
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ntop parameter in plotPCA(). DESeq2
deseq2 written 6 days ago by Mthabisi Moyo • 10 • updated 4 days ago by Michael Love ♦ 18k
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1
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41
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Bad replicate DESeq2
deseq2 written 7 days ago by riccardo • 40 • updated 4 days ago by Michael Love ♦ 18k
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1
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34
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1
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DSEq2 error message at loading
deseq2 written 5 days ago by christophe.desmet • 0 • updated 4 days ago by Levi Waldron ♦ 490
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2
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45
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2
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Issues in generating workable rank file for GSEA
gseabase deseq2 gsea pre-ranked gsea written 5 days ago by csijst • 0 • updated 5 days ago by Michael Love ♦ 18k
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1
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45
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1
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DESeq2 library loading error
deseq2 written 7 days ago by smartdogs4chris • 0 • updated 7 days ago by Michael Love ♦ 18k
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2
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46
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2
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Whether "read_counts_miRNA" or "reads_per_million_miRNA" to use for DE expression analysis using DeSeq2
mirna normalization deseq2 tcgadownload written 8 days ago by Björn • 0 • updated 7 days ago by Lorena Pantano • 90
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63
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Differential expression across time points
deseq2 written 8 days ago by udp3f • 0 • updated 8 days ago by Michael Love ♦ 18k
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48
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1
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Error in DESeq2 Unmix() function: L-BFGS-B needs finite values of 'fn'
rnaseq deseq2 deconvolution written 8 days ago by jennyl.smith12 • 0 • updated 8 days ago by Michael Love ♦ 18k
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89
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Defining subsets for FDR correction
deseq2 fdr ihw written 9 days ago by sven.schenk • 10 • updated 9 days ago by Michael Love ♦ 18k
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