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11
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1
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plotMA in deseq2
deseq2 written 2 hours ago by gv • 40 • updated 2 hours ago by Michael Love ♦ 19k
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89
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Actually meaning of log2FoldChange, p-value & padj in DESeq2 results
deseq2 rna-seq written 2 days ago by hffqyd • 0
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68
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DESeq2 for large de novo transcripts assembly
deseq2 written 2 days ago by Emiliano Canton • 10 • updated 2 days ago by Michael Love ♦ 19k
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1
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75
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Using deseq2 with batch effects and classification as downstream analysis
classification deseq2 batch effect written 3 days ago by Maryam • 0 • updated 2 days ago by Michael Love ♦ 19k
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74
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New computer won't install DESeq2
deseq2 rstudio install error written 5 days ago by jyoung • 0 • updated 5 days ago by Michael Love ♦ 19k
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49
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1
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Strange lfcShrink plot when running DESeq2 workflow
rnaseq deseq deseq2 rna-seq written 5 days ago by Ben Gabriel • 0
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98
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DESEq2 Error in rownames<-(*tmp*, value = names(x))
deseq2 software error written 10 days ago by ashley.doane • 20 • updated 5 days ago by Michael Love ♦ 19k
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2
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42
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2
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Reason: image not found Error: package GenomeInfoDb could not be loaded
deseq2 conda written 5 days ago by adam.cribbs • 10
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67
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1
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how to make gene cluster from RNA-Seq counts?
rnaseq deseq2 R written 5 days ago by ahmad.moousavi • 0 • updated 5 days ago by Michael Love ♦ 19k
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1
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66
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DEseq2 - minimum number of genes
deseq2 written 6 days ago by stefanie.graindorge • 0 • updated 6 days ago by Michael Love ♦ 19k
2
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1
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49
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1
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DeSeq2 batch effect
deseq2 written 7 days ago by santamariagianluca • 0 • updated 7 days ago by Michael Love ♦ 19k
2
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66
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1
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DESeq2 design with multiple factors
rnaseq deseq2 multiple factor design written 7 days ago by Vanilla • 0 • updated 7 days ago by Michael Love ♦ 19k
2
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71
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How to block for a subject in a 2 factor design formula
rnaseq deseq2 differential gene expression written 8 days ago by Onyi Ukay • 0
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49
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trouble importing data for DEseq2 workflow
deseq2 tutorial pasilla tximport tximportdata written 8 days ago by Stanley Yang • 0 • updated 8 days ago by Michael Love ♦ 19k
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36
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2
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Approaches for DESeq2 analysis with one factor and many levels
deseq2 written 8 days ago by fl • 0
3
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98
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1
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DESEQ2 normalize data of population data
deseq2 multiple factor design written 9 days ago by vrehaman • 0 • updated 9 days ago by Michael Love ♦ 19k
3
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60
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Interpreting the results from lfcShrink() with apeglm in DESeq2
deseq2 lfcshrink apeglm written 12 days ago by charles.foster • 0 • updated 12 days ago by Michael Love ♦ 19k
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66
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Calculating FPKM from raw counts data using fpkm() in deseq2
geneexpression deseq2 R fpkm() written 12 days ago by Beginner • 50 • updated 12 days ago by Michael Love ♦ 19k
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44
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DESeq2 got stuck for one night, restarting?
rnaseq deseq2 written 13 days ago by Raymond • 0 • updated 13 days ago by Michael Love ♦ 19k
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1
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103
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Deseq2 design for one condition over 8 different time point
deseq deseq2 rna-seq design matrix written 13 days ago by thindmarsmission • 0 • updated 13 days ago by Michael Love ♦ 19k
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61
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DESeq2 normalization Factor Matrix to correct for uneven targeted sequencing coverage
normalization deseq2 written 14 days ago by Thomas_WILLEMS • 0 • updated 13 days ago by Michael Love ♦ 19k
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42
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Usage of prepDE.py with stringtie and deseq2
deseq2 stringtie prepde written 13 days ago by Nancy • 0 • updated 13 days ago by Michael Love ♦ 19k
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48
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Relationship between base mean and adjusted p-value?
deseq2 written 13 days ago by Louis Kok • 0 • updated 13 days ago by Michael Love ♦ 19k
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48
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1
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Averaging over biological replicates with DESeq2 for heatmap plotting
deseq2 average pheatmap written 14 days ago by chighfi • 0 • updated 14 days ago by James W. MacDonald ♦ 48k
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83
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Quicker way to contrast multiple genotypes with treatment in DeSeq2
deseq2 written 18 days ago by bdy8 • 0 • updated 14 days ago by Michael Love ♦ 19k
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