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0
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0
answers
50
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0
answers
RNA sequencing analysis for time point experiment using DeSeq2
rnaseq deseq2 rna written 13 hours ago by hrishi27n • 0
2
votes
3
answers
70
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3
answers
Sparsity plot and how that indicates a model fit to negative binomial distribution
deseq2 written 1 day ago by tg369 • 0
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2
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56
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2
answers
Differences in PCA plot - rld versus vsd normalized data (DESeq2)
deseq2 batch effect pca written 1 day ago by pkachroo • 10 • updated 1 day ago by Michael Love ♦ 13k
2
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2
answers
66
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2
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DESeq2 - PCAplot differs between rlog and vsd transformation
deseq2 rlog transformation vsd plotpca written 2 days ago by Jane Merlevede • 90
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3
answers
74
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3
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Load saved RangedSummarizedExperiment as Deseq2 dataset
rnaseq deseq2 hdf5 rangedsummarizedexperiment written 3 days ago by Jakob Petereit • 0
3
votes
3
answers
86
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3
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DESeq function taking too long
rnaseq deseq deseq2 factor written 2 days ago by sup230 • 0 • updated 2 days ago by Peter Langfelder • 1.2k
3
votes
2
answers
136
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2
answers
deseq2 complex time course data with out replicates
rnaseq timecourse deseq2 written 3 days ago by novicebioinforesearcher • 0 • updated 3 days ago by Gavin Kelly • 230
1
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2
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64
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2
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[DESeq2] time-course Experimental design
rnaseq deseq2 time-course written 3 days ago by inzirio • 0 • updated 3 days ago by Gavin Kelly • 230
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1
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63
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1
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Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis
deseq2 rna-seq random effects batch effects written 3 days ago by Dipro • 0 • updated 3 days ago by Michael Love ♦ 13k
1
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1
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87
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1
answer
DESeqDataSetFromMatrix {DESeq2} is wrong on my computer
deseq2 deseqdatasetfrommatrix written 6 days ago by zxy5139 • 0 • updated 6 days ago by Michael Love ♦ 13k
0
votes
1
answer
55
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1
answer
resultnames(dds) not giving correct output
deseq2 resultsnames written 6 days ago by mrigaya.mehra • 0 • updated 6 days ago by Michael Love ♦ 13k
0
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1
answer
83
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1
answer
DESeq2 resultsNames(dds) not giving the right comparisons?.
deseq2 resultsnames written 7 days ago by davichen • 0
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2
answers
67
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2
answers
Time points and donors - errors with contrasts
deseq2 contrast deseq2 error written 16 days ago by sasha • 0
3
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2
answers
90
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2
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Does DEseq2 analysis make GOseq redundant?
goseq deseq2 gene ontology differential gene expression written 8 days ago by david.rinker • 0
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1
answer
54
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1
answer
gene names in results table
deseq2 written 8 days ago by kalaga • 0 • updated 8 days ago by Michael Love ♦ 13k
0
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3
answers
76
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3
answers
DESeq2: dealing with outliers
deseq2 written 9 days ago by nikmehr22 • 0
0
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2
answers
64
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2
answers
DESeq2 using interaction terms or grouping variable
rnaseq deseq2 written 9 days ago by rrcutler • 10
3
votes
1
answer
70
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1
answer
all pairwise comparisons, some genes can have zero counts everywhere in a given comparison
deseq2 written 9 days ago by anton.kratz • 30 • updated 8 days ago by Michael Love ♦ 13k
1
vote
1
answer
61
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1
answer
tximport error with salmon version
deseq2 salmon tximport written 9 days ago by agetzler • 0 • updated 9 days ago by Michael Love ♦ 13k
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1
answer
46
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1
answer
Phyloseq to DESeq2 with multiple variables
phyloseq deseq2 multiple time points written 12 days ago by campbell87 • 0 • updated 11 days ago by Michael Love ♦ 13k
4
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2
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67
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2
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DESeq2: Error in cleanContrast
deseq2 design and contrast matrix written 15 days ago by pokharel.kisun • 0 • updated 15 days ago by Peter Langfelder • 1.2k
4
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1
answer
50
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1
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is it necessary / recommended to separate samples when doing diff. exp. with DESeq2?
deseq2 written 16 days ago by anton.kratz • 30 • updated 15 days ago by Michael Love ♦ 13k
2
votes
1
answer
59
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1
answer
DEseq2 time-series before and after Infection
timecourse deseq2 multiple factor design written 15 days ago by Bio_Ram • 0 • updated 15 days ago by Michael Love ♦ 13k
2
votes
1
answer
88
views
1
answer
DESeq2 time series tissue specific differences over time
rnaseq timecourse deseq2 multiple time points written 23 days ago by Nicholas Owen • 0
3
votes
1
answer
77
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1
answer
Cross-species RNA-seq with DESeq2
rnaseq deseq2 across species written 17 days ago by vtartaglio • 0 • updated 16 days ago by Michael Love ♦ 13k
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