Showing: deseq2 • reset
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How to handle batch effect and interaction with experimental variables
deseq2 statistics differential expression written 15 hours ago by A • 0
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same results changing contrast function
deseq2 contrast deg written 11 hours ago by ire.ontiveros • 0 • updated 10 hours ago by Michael Love ♦ 26k
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Choosing and fixing the denominator in DESeq2 analysis
deseq2 written 3 days ago by kistinamohamed • 0 • updated 3 days ago by Michael Love ♦ 26k
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Suitability of Deseq2 for analysis of different environmental metagenomes (DNA)
deseq2 written 5 days ago by zoraurora • 0 • updated 4 days ago by Michael Love ♦ 26k
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DESeq2 likelihood ratio test (LRT) design
deseq2 written 5 days ago by ijvechetti • 0
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Is DESeq2 performs the same when I am loading library DESeq2?
deseq2 written 9 months ago by Fereshteh • 10
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RNAseq PCA resembles subject-specific effect in a paired study design
deseq2 salmon written 9 days ago by guanwang179 • 10 • updated 8 days ago by Kevin Blighe • 300
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DESeq2 Analysis of RNA-Edited Reads and Circular RNA
deseq2 circrna rna-editing written 12 days ago by maxhenryhills • 0 • updated 9 days ago by Michael Love ♦ 26k
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Variance assumptions in DESeq2 with blocks of linkage disequilibrium/chromosomal inversions
normalization deseq2 written 12 days ago by jrmerri • 0 • updated 9 days ago by Michael Love ♦ 26k
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Can I use translation efficiency counts (Ribosome profiling TPM/RNASeq TPM) as an input for DESq2 in order to perform Differential Translation analysis?
deseq2 ribosome profiling differential translation written 10 days ago by katerinadouka91 • 0 • updated 9 days ago by Michael Love ♦ 26k
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Why does dispersion estimation in DESeq2 depend on the design formula?
deseq2 written 9 days ago by Samuel • 0 • updated 9 days ago by Michael Love ♦ 26k
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How Does DESeq2 estimate dispersions?
deseq2 ribo-seq written 11 days ago by li.keren.cn • 0 • updated 11 days ago by James W. MacDonald ♦ 51k
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DESeq2 outlier replacement with respect to continuous variable
deseq2 written 11 days ago by bryancquach • 0 • updated 11 days ago by Michael Love ♦ 26k
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DESeq2 doesn't return the most drastically DEG
deseq2 tcga written 12 days ago by ndjayne • 0
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DESeq2 PC1 variance on the PCA plot does not match proportion of variance
deseq2 written 11 days ago by Akula, Nirmala NIH/NIMH [C] • 190 • updated 11 days ago by Michael Love ♦ 26k
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DESeq2 design formula and lfcShrink() questions
deseq2 written 12 days ago by guanwang179 • 10 • updated 11 days ago by Michael Love ♦ 26k
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Multi-group design when performing DE analysis
deseq2 written 11 days ago by n.naharfancy • 0 • updated 11 days ago by Kevin Blighe • 300
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Diffbind for regressing multiple confounding variables (blocking factors)
chipseq regression diffbind deseq2 block written 11 days ago by melnuesch • 10
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using tximport with STAR transcript-quantification output
deseq2 star tximport written 13 days ago by mohamedrefaat.1.1992 • 0 • updated 13 days ago by Michael Love ♦ 26k
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edgeR or DESeq2 between duplicated chromosomes in the same individual
normalization edger deseq2 dge written 20 days ago by grant.dejong • 0 • updated 13 days ago by Gordon Smyth ♦ 39k
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batch effect correction for TCGA RNAseq harmonized data
limma deseq2 written 16 days ago by KCLiv • 10 • updated 15 days ago by Michael Love ♦ 26k
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DESeq2 lfcShrink apeglm
deseq2 written 17 days ago by g.wang2 • 0 • updated 17 days ago by Michael Love ♦ 26k
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Once again: Analyze Paired Samples from DESeq2 Vignette design formula and how to interprete
deseq2 written 18 days ago by Benoit.Fiset • 20 • updated 18 days ago by Michael Love ♦ 26k
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DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per million?
deseq2 rlog vst written 18 days ago by juheon.maeng • 0 • updated 18 days ago by Michael Love ♦ 26k
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Correcting a nested batch effect
deseq2 written 19 days ago by Mehdi Emam • 0 • updated 18 days ago by Michael Love ♦ 26k
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