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1
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1
answer
79
views
1
answer
Actually meaning of log2FoldChange, p-value & padj in DESeq2 results
deseq2 rna-seq written 1 day ago by hffqyd • 0
1
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1
answer
51
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1
answer
DESeq2 for large de novo transcripts assembly
deseq2 written 1 day ago by Emiliano Canton • 10 • updated 1 day ago by Michael Love ♦ 19k
3
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1
answer
70
views
1
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Using deseq2 with batch effects and classification as downstream analysis
classification deseq2 batch effect written 2 days ago by Maryam • 0 • updated 1 day ago by Michael Love ♦ 19k
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1
answer
70
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1
answer
New computer won't install DESeq2
deseq2 rstudio install error written 4 days ago by jyoung • 0 • updated 4 days ago by Michael Love ♦ 19k
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1
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49
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1
answer
Strange lfcShrink plot when running DESeq2 workflow
rnaseq deseq deseq2 rna-seq written 4 days ago by Ben Gabriel • 0
1
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1
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94
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1
answer
DESEq2 Error in rownames<-(*tmp*, value = names(x))
deseq2 software error written 9 days ago by ashley.doane • 20 • updated 4 days ago by Michael Love ♦ 19k
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2
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40
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2
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Reason: image not found Error: package GenomeInfoDb could not be loaded
deseq2 conda written 4 days ago by adam.cribbs • 10
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1
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63
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1
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how to make gene cluster from RNA-Seq counts?
rnaseq deseq2 R written 4 days ago by ahmad.moousavi • 0 • updated 4 days ago by Michael Love ♦ 19k
2
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1
answer
65
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1
answer
DEseq2 - minimum number of genes
deseq2 written 5 days ago by stefanie.graindorge • 0 • updated 5 days ago by Michael Love ♦ 19k
2
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1
answer
46
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1
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DeSeq2 batch effect
deseq2 written 6 days ago by santamariagianluca • 0 • updated 6 days ago by Michael Love ♦ 19k
2
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1
answer
64
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1
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DESeq2 design with multiple factors
rnaseq deseq2 multiple factor design written 6 days ago by Vanilla • 0 • updated 6 days ago by Michael Love ♦ 19k
2
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1
answer
68
views
1
answer
How to block for a subject in a 2 factor design formula
rnaseq deseq2 differential gene expression written 7 days ago by Onyi Ukay • 0
1
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1
answer
49
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1
answer
trouble importing data for DEseq2 workflow
deseq2 tutorial pasilla tximport tximportdata written 7 days ago by Stanley Yang • 0 • updated 7 days ago by Michael Love ♦ 19k
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2
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36
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2
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Approaches for DESeq2 analysis with one factor and many levels
deseq2 written 7 days ago by fl • 0
3
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1
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95
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1
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DESEQ2 normalize data of population data
deseq2 multiple factor design written 8 days ago by vrehaman • 0 • updated 8 days ago by Michael Love ♦ 19k
3
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1
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60
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1
answer
Interpreting the results from lfcShrink() with apeglm in DESeq2
deseq2 lfcshrink apeglm written 12 days ago by charles.foster • 0 • updated 11 days ago by Michael Love ♦ 19k
0
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1
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65
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1
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Calculating FPKM from raw counts data using fpkm() in deseq2
geneexpression deseq2 R fpkm() written 11 days ago by Beginner • 50 • updated 11 days ago by Michael Love ♦ 19k
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1
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43
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1
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DESeq2 got stuck for one night, restarting?
rnaseq deseq2 written 12 days ago by Raymond • 0 • updated 12 days ago by Michael Love ♦ 19k
4
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1
answer
100
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1
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Deseq2 design for one condition over 8 different time point
deseq deseq2 rna-seq design matrix written 12 days ago by thindmarsmission • 0 • updated 12 days ago by Michael Love ♦ 19k
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1
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60
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1
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DESeq2 normalization Factor Matrix to correct for uneven targeted sequencing coverage
normalization deseq2 written 13 days ago by Thomas_WILLEMS • 0 • updated 12 days ago by Michael Love ♦ 19k
0
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1
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41
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1
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Usage of prepDE.py with stringtie and deseq2
deseq2 stringtie prepde written 12 days ago by Nancy • 0 • updated 12 days ago by Michael Love ♦ 19k
1
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1
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48
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1
answer
Relationship between base mean and adjusted p-value?
deseq2 written 12 days ago by Louis Kok • 0 • updated 12 days ago by Michael Love ♦ 19k
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1
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48
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1
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Averaging over biological replicates with DESeq2 for heatmap plotting
deseq2 average pheatmap written 13 days ago by chighfi • 0 • updated 13 days ago by James W. MacDonald ♦ 48k
1
vote
1
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82
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1
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Quicker way to contrast multiple genotypes with treatment in DeSeq2
deseq2 written 17 days ago by bdy8 • 0 • updated 13 days ago by Michael Love ♦ 19k
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1
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65
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1
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Splitting a dataset and control sample batch
deseq2 interactions batch effect correction grouping variable written 18 days ago by mat.lesche • 40 • updated 13 days ago by Michael Love ♦ 19k
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