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1
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1
answer
55
views
1
answer
Timecourse gene expression analysis with DESeq2
timecourse deseq2 multiple factor design lrt written 14 hours ago by juditkovacsbio • 0 • updated 12 hours ago by Michael Love ♦ 20k
2
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1
answer
82
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1
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Deseq normalization with adjusting gene length
normalization deseq2 written 2 days ago by Maryam • 0
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1
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47
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1
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Reverse Normalized RNA-seq readcounts/fpkm values to raw readcounts
normalization deseq2 rna-seq readcount reverse written 1 day ago by knholm • 0 • updated 1 day ago by Michael Love ♦ 20k
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1
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38
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1
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Conversion from counts to FPKM
normalization deseq2 counts fpkm fpkm() written 1 day ago by chiara.facciotto • 0 • updated 1 day ago by Michael Love ♦ 20k
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1
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57
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1
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DESeq2 package : Error in checkFullRank(modelMatrix) while designing multi factor
deseq2 rna-seq multiple factor design design matrix design model written 1 day ago by iammiso • 0 • updated 1 day ago by Michael Love ♦ 20k
1
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1
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57
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1
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model for LRT
deseq2 lrt written 2 days ago by takashi.k1201 • 0 • updated 2 days ago by Michael Love ♦ 20k
2
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1
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39
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1
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Change lower bound 'optim' function in DESeq2::unmix() to 0.001 to prevent error
deseq2 unmix written 3 days ago by a.v.vliet • 0 • updated 3 days ago by Michael Love ♦ 20k
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1
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64
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1
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DESeq2: Small treatment group, large control group
deseq2 sample size written 3 days ago by kel.chee86 • 0 • updated 3 days ago by Michael Love ♦ 20k
3
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1
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97
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1
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lfcShrink, interactions, and ashr
deseq2 contrast lfcshrink written 4 days ago by jurbach • 10 • updated 4 days ago by Michael Love ♦ 20k
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1
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109
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1
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Issue with DESeqDataSetFromMatrix
rnaseq affy deseq2 deseqdatasetfrommatrix written 4 days ago by matthew.sinton • 0 • updated 4 days ago by Michael Love ♦ 20k
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1
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45
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1
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When should I use betaprior=T
deseq2 written 7 days ago by andrebolerbarros • 0 • updated 7 days ago by Michael Love ♦ 20k
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1
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39
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1
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DGE Analysis between 3 conditions
rnaseq deseq2 written 8 days ago by evocanres • 0 • updated 8 days ago by Michael Love ♦ 20k
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1
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33
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1
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problem in loading Deseq2
deseq2 s4vectors written 8 days ago by roghaiyeh.safari • 0 • updated 8 days ago by Martin Morgan ♦♦ 22k
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1
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53
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1
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DESeq2 count outlier replacement from Cook's threshold
rnaseq deseq deseq2 outliers count outliers written 9 days ago by lefeverde • 0 • updated 9 days ago by Michael Love ♦ 20k
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1
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54
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1
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DESeq2: Analyzing just two normal+tumour pairs
deseq2 reporting tools written 9 days ago by mmokrejs • 0
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1
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48
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1
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Get normalized COUNTS Deseq2
deseq2 normalized counts written 10 days ago by anaQ • 0 • updated 10 days ago by Steve Lianoglou ♦ 12k
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1
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36
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1
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large range of LFC in DESeq2
deseq2 lfc betaprior written 10 days ago by Mariaxi • 0 • updated 10 days ago by Michael Love ♦ 20k
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2
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68
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2
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Data normalization and transformation using DESeq2
rnaseq normalization deseq2 variancestabilizingtransformation rlog transformation written 10 days ago by chiara.facciotto • 0
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1
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77
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1
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DESeq results gives all genes
deseq2 design matrix results written 10 days ago by evocanres • 0 • updated 10 days ago by Michael Love ♦ 20k
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1
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14 follow
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DESeq2 likelihood ratio test (LRT) design - 2 genotypes, 4 time points
rnaseq deseq2 design lrt reduced model written 19 months ago by I.Castanho • 50 • updated 11 days ago by evocanres • 0
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92
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DeSeq2 with extremely variable samples
deseq2 written 11 days ago by Helene • 0 • updated 11 days ago by Michael Love ♦ 20k
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1
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86
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1
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DESeq2 PCA plotting
deseq2 michael love written 11 days ago by sam.far.7 • 0 • updated 11 days ago by Michael Love ♦ 20k
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1
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45
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1
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DESeq2 then fdrtool
deseq2 fdrtool written 11 days ago by bioinfo • 0 • updated 11 days ago by Michael Love ♦ 20k
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1
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48
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1
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collapseReplicates changes order of factors
deseq2 bug written 11 days ago by António Miguel de Jesus Domingues • 430
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2
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59
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DESeq2 estimateSizeFactors with control genes
deseq2 differential gene expression controls references written 14 days ago by cris.kgs • 0 • updated 13 days ago by mahesh • 0
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