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1
answer
38
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1
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DESeq2 with multi level
deseq2 lfcshrink written 1 day ago by pierre.k • 0 • updated 10 hours ago by Michael Love ♦ 17k
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2
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44
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2
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DESEq2 Principal Component Analysis with different genes biotypes (protein coding, miRNAs, lncRNAs, etc)
deseq2 pca rlog transformation biotype written 20 hours ago by JoannaF • 0
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25
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1
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DESEQ2 design with multiple conditions
deseq2 design matrix written 1 day ago by vrehaman • 0 • updated 16 hours ago by Michael Love ♦ 17k
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56
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1
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Tutorial: use deseq2 in asthma
deseq2 tutorial written 1 day ago by krwyaong.ju • 0
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1
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64
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1
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interaction model deseq2 specific DE genes
deseq2 differential expression interaction model written 4 days ago by aec • 30 • updated 4 days ago by Michael Love ♦ 17k
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1
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86
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1
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Unexpected differences in results from paired analysis with DESeq2
deseq2 paired analysis factor levels written 4 days ago by luisa.bresadola • 0 • updated 4 days ago by Michael Love ♦ 17k
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1
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51
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1
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DESeq2 - Test for linear combinations
deseq2 linear combination written 4 days ago by xavi • 0 • updated 4 days ago by Michael Love ♦ 17k
3
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2
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2.5k
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2
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DESeq2 Error in varianceStabilizingTransformation
deseq2 written 3.5 years ago by mfarhi • 10 • updated 4 days ago by kasia_piwosz • 0
1
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1
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40
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1
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Information regarding the (minimum) number of genes needed to analyse with DESeq2
deseq2 written 5 days ago by suranandbabu85 • 0 • updated 5 days ago by Ryan C. Thompson ♦ 6.5k
1
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1
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48
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1
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miRNA DE analysis using DeSeq2
deseq2 written 6 days ago by sehjpal.madhu • 10 • updated 6 days ago by Michael Love ♦ 17k
2
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1
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41
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1
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Understand how DESeq estimates SE for log2 fold change
deseq2 written 6 days ago by mt1022 • 0 • updated 6 days ago by Michael Love ♦ 17k
1
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1
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85
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1
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Allele-specific expression with different gene lenghts
rnaseq deseq2 allele-specific-expression written 8 days ago by gtechbio • 0 • updated 7 days ago by Michael Love ♦ 17k
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69
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1
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DESeq2: Poor dispersion fit, even when a local or custom fit is used
deseq2 dispersion written 8 days ago by Frederik Ziebell • 0
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1
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69
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1
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normalisation of count data
deseq2 written 11 days ago by sara.beier • 0 • updated 11 days ago by Ryan C. Thompson ♦ 6.5k
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1
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60
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1
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DESeq account for using two different siRNA constructs to knockdown same gene
deseq2 design and contrast matrix multiple factor design design matrix written 11 days ago by khhsource • 0 • updated 11 days ago by Michael Love ♦ 17k
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1
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95
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1
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colData and design problem
deseq2 written 14 days ago by soheilazareie • 0
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1
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68
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tech replicates or bio replicate?
deseq2 written 22 days ago by Xianjun Dong • 0 • updated 14 days ago by williamgeorge51547 • 0
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1
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50
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1
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DESeq2 (Different results when using interactive term equation)
deseq2 written 15 days ago by LR0306 • 0 • updated 14 days ago by Michael Love ♦ 17k
4
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1
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100
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1
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Convert Normalized RNA-Seq counts to TPM after Batch Correction
limma sva deseq2 written 16 days ago by rrcutler • 50
1
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2
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87
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2
answers
deseq2 normalization with metagenomics data
deseq2 written 21 days ago by David • 860 • updated 16 days ago by Levi Waldron • 410
1
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1
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75
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1
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Gene ID Duplicates
genetics deseq2 tutorial written 19 days ago by anokhi1997 • 0 • updated 19 days ago by James W. MacDonald ♦ 46k
0
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1
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66
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1
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How are the shrunk result data used in DESeq2?
deseq2 lfcshrink written 19 days ago by tkapell • 0 • updated 19 days ago by Michael Love ♦ 17k
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2
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79
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2
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Inconsistent RNAseq data in knockdown expt
deseq2 written 22 days ago by csijst • 0 • updated 20 days ago by Peter Langfelder • 1.4k
1
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1
answer
63
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1
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Likeliness Ratio Test
deseq2 design and contrast matrix written 21 days ago by csijst • 0
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1
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115
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1
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contrast design of DESeq2 for correlated data
deseq2 written 22 days ago by Xianjun Dong • 0 • updated 20 days ago by Michael Love ♦ 17k
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