3
votes
1
answer
125
views
1
answer
log fold change threshold in Deseq2 - using lfcthreshold
deseq2 lfcthreshold written 25 days ago by lirongrossmann0 • updated 19 days ago by Michael Love15k
0
votes
1
answer
139
views
1
answer
Base mean count threshold
deseq2 base written 27 days ago by lirongrossmann0 • updated 19 days ago by Michael Love15k
1
vote
2
answers
287
views
2
answers
0
votes
1
answer
117
views
1
answer
Multiple tests in a single deseq object
deseq2 written 24 days ago by kieran.mace10 • updated 22 days ago by Wolfgang Huber13k
2
votes
2
answers
194
views
2
answers
13
votes
3
answers
3.0k
views
12 follow
3
answers
New function lfcShrink() in DESeq2
deseq2 written 8 months ago by Michael Love15k
2
votes
1
answer
158
views
1
answer
humann2 output appropriate for EdgeR or DESeq2 analysis
edger deseq2 written 4 weeks ago by nyoungb20 • updated 4 weeks ago by Aaron Lun18k
1
vote
1
answer
153
views
1
answer
coef funcition execept for pvalues
deseq2 written 4 weeks ago by kieran.mace10 • updated 4 weeks ago by Michael Love15k
0
votes
1
answer
200
views
1
answer
2
votes
2
answers
154
views
2
answers
fdrtool - How does it work?
deseq2 fdrtool written 5 weeks ago by rrcutler30
1
vote
1
answer
119
views
1
answer
RNAseq tximport Deseq2
deseq2 tximport written 4 weeks ago by tanyabioinfo20 • updated 4 weeks ago by Michael Love15k
2
votes
1
answer
146
views
1
answer
1
vote
1
answer
124
views
1
answer
3
votes
1
answer
147
views
1
answer
0
votes
1
answer
119
views
1
answer
Batch effect removal with Deseq2
limma deseq2 removebatcheffect() batch effect written 4 weeks ago by lirongrossmann0 • updated 4 weeks ago by Michael Love15k
0
votes
1
answer
114
views
1
answer
Multiple comparisons in DESeq2
deseq2 written 5 weeks ago by tkapello0 • updated 4 weeks ago by Michael Love15k
0
votes
1
answer
142
views
1
answer
Deseq2: 3 factors design
deseq2 multiple factor design written 5 weeks ago by marburg21070 • updated 5 weeks ago by Michael Love15k
0
votes
1
answer
120
views
1
answer
DESeq2 design matrix
deseq2 written 5 weeks ago by deeptiptl740 • updated 5 weeks ago by Michael Love15k
1
vote
1
answer
117
views
1
answer
DESeq2 contrasts within group only comparing against one level
deseq2 written 5 weeks ago by Nmabe0 • updated 5 weeks ago by Michael Love15k
1
vote
1
answer
106
views
1
answer
Testing moderated fold changes in DESeq2 version >= 1.16.0
deseq2 written 5 weeks ago by david.watson10 • updated 5 weeks ago by Michael Love15k
2
votes
1
answer
136
views
1
answer
1
vote
3
answers
182
views
3
answers
4
votes
2
answers
147
views
2
answers
0
votes
1
answer
109
views
1
answer
0
votes
1
answer
92
views
1
answer
disagreement between log2FoldChange and lfcMLE in DESeq2
deseq2 log2fc shrinkage written 5 weeks ago by aec30 • updated 5 weeks ago by Michael Love15k
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