Showing: deseq2reset
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DESeqDataSetFromTximport with kallisto abundances.
deseq2 tximport written 2.1 years ago by ben30 • updated 21 months ago by Ming Wang0
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deseq2 correcting for batch effects
deseq2 removebatcheffect() batch effect design matrix written 21 months ago by Assa Yeroslaviz1.4k • updated 21 months ago by Michael Love24k
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Log2FoldChange shrinkage method in DESeq2
deseq2 lfcshrink apeglm written 14 months ago by Benjamin Ostendorf80 • updated 14 months ago by Michael Love24k
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DESeq2 on NanoString Data
deseq2 nanostring written 13 months ago by casey.rimland130 • updated 13 months ago by Michael Love24k
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Dispersion fit and p-value distributions
rnaseq deseq2 fdrtool written 9 months ago by C T90 • updated 9 months ago by Ryan C. Thompson7.3k
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DESeq2: Paired Test
deseq deseq2 written 5.3 years ago by Pankaj Agarwal100
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DESeq2 Error in estimateSizeFactorsForMatrix
sequencing alignment deseq deseq2 written 5.1 years ago by Guest User12k • updated 4.1 years ago by gaelgarcia0
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Using DESeq2: experimental design and extracting results
deseq deseq2 written 5.1 years ago by bio200160 • updated 5.1 years ago by Michael Love24k
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Confused in the usage of formula in DESeq or DESeq2
deseq deseq2 written 4.7 years ago by skyoflcz20 • updated 2.1 years ago by bio200160
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DESeq2: add annotations (from data frame) to DESeqDataSet
annotation deseq2 granges written 4.7 years ago by Darya Vanichkina110 • updated 3.5 years ago by bioprog0
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DESeq2 Model Design
deseq2 linear model model written 4.6 years ago by andrew.j.skelton73320 • updated 4.6 years ago by James W. MacDonald50k
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DESeq2 baseMean values for each sample
deseq2 written 4.6 years ago by aburkha6920
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deseq2 filter the low counts
deseq2 lowcount written 4.4 years ago by aristotele_m30 • updated 2.8 years ago by pkachroo10
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PlotMA Error_Coercing to a vector
deseq2 written 4.2 years ago by Jessica Chen20
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DESeq2 results with RUVSeq values
deseq2 ruvseq sizefacotrs written 4.2 years ago by Assa Yeroslaviz1.4k • updated 4.2 years ago by davide risso830
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Dependence of rlog transformed value range on number of samples
deseq2 rlog written 4.2 years ago by snsansom20 • updated 4.2 years ago by Michael Love24k
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Group comparison in DESeq2
deseq2 results written 3.9 years ago by jjinhyoungkim20 • updated 3.9 years ago by Michael Love24k
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