Showing: deseq2reset
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log2FoldChange calculation in DESeq2 output
deseq2 written 3.5 years ago by keerthisannareddy0 • updated 3.5 years ago by Michael Love24k
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Confused in the usage of formula in DESeq or DESeq2
deseq deseq2 written 4.7 years ago by skyoflcz20 • updated 2.1 years ago by bio200160
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Analyzing RNA-Seq data without replicates using DESeq
deseq deseq2 written 4.8 years ago by solgakar@bi.technion.ac.il60 • updated 4.8 years ago by Michael Love24k
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DESeq2: Starting from count tables
deseq2 written 4.0 years ago by jjinhyoungkim20 • updated 4.0 years ago by Michael Love24k
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Deseq2 PCA plot customize
deseq2 pca written 3.5 years ago by jarod_v6@libero.it40 • updated 3.5 years ago by Michael Love24k
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Estimation of dispersion in DeSeq and DeSeq2
rnaseq deseq deseq2 written 4.6 years ago by JK10 • updated 4.6 years ago by Michael Love24k
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Deseq2 supervised heatmap
deseq2 supervised written 4.4 years ago by aristotele_m30
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DESeq2 Model Design
deseq2 linear model model written 4.7 years ago by andrew.j.skelton73320 • updated 4.6 years ago by James W. MacDonald50k
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Usability of ERCC spike-ins in standard RNAseq experiments
rnaseq deseq2 ercc written 2.8 years ago by mbeckste20 • updated 2.8 years ago by Simon Anders3.5k
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plotting heatmap from DESeqDataSet
deseq2 heatmap written 3.9 years ago by nishikant.wase0 • updated 3.9 years ago by Michael Love24k
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What to use: PCA or tSNE dimension reduction in DESeq2 analysis?
rnaseq deseq2 pca tsne written 2.1 years ago by s.w.vanderlaan20 • updated 2.1 years ago by Kushal K Dey10
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DESeq2 and ComBat
deseq2 combat written 3.5 years ago by ribioinfo70 • updated 3.5 years ago by Bernd Klaus560
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DESeq2 PCA plot: paired analysis
deseq2 pca written 3.4 years ago by g.atla0
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Difference between DESeq and DESeq2
deseq deseq2 nbionormtest written 3.3 years ago by Biologist70 • updated 3.3 years ago by Simon Anders3.5k
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DESeq2: up- and down-regulated genes
deseq2 written 5.2 years ago by Alicia R. PĂ©rez-Porro140 • updated 5.2 years ago by Simon Anders3.5k
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Normalization methodology in DESeq/DESeq2 vs edgeR
normalization edger deseq deseq2 written 3.7 years ago by Nik Tuzov70 • updated 3.7 years ago by Simon Anders3.5k
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DESeq2 rlog transformation
normalization deseq2 written 4.6 years ago by francesca.defilippis60 • updated 4.6 years ago by Wolfgang Huber13k
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Deseq2 error estimating size factors -- zeros in count matrix
deseq2 estimatesizefactors written 3.5 years ago by ssabri20 • updated 3.5 years ago by Michael Love24k
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