Showing: deseq2 • reset
Invalid sort parameter received
Invalid limit parameter received
Search
1
vote
1
answer
66
views
1
answer
Different results with DESeq2 and EdgeR
edger deseq2 written 16 hours ago by jivarajivaraj • 10 • updated 1 hour ago by Gordon Smyth ♦ 36k
0
votes
1
answer
15
views
1
answer
Is it allowed to fit two models to make between and within subjects comparisons separately?
rnaseq limma edger deseq2 random effects written 6 hours ago by thyagoleal • 30 • updated 2 hours ago by Gordon Smyth ♦ 36k
0
votes
1
answer
24
views
1
answer
Results table completely wrong for specified contrast of
deseq2 counts logfoldchange written 7 hours ago by A • 40 • updated 7 hours ago by Michael Love ♦ 21k
0
votes
0
answers
30
views
0
answers
DESeq2 for analyzing differential expression based on dispersion across samples within groups, instead of based on expression means.
deseq2 dispersion written 12 hours ago by emilio.marmol • 0
0
votes
1
answer
41
views
1
answer
Deseq2: How to compine reseult of different pairwise comparisons
deseq2 written 1 day ago by tarekzakaria.badr • 0 • updated 14 hours ago by Michael Love ♦ 21k
1
vote
1
answer
33
views
1
answer
different observation of DEG for same group
deseq2 de written 18 hours ago by lkianmehr • 0 • updated 14 hours ago by Michael Love ♦ 21k
0
votes
1
answer
76
views
1
answer
DESeq2 LRT test behaving strangely?
deseq2 written 3 days ago by casikecola • 0
0
votes
1
answer
59
views
1
answer
DESeq2 Formula Design - biological & technical replicates - 3 groups
deseq2 written 3 days ago by rm284 • 0 • updated 3 days ago by Michael Love ♦ 21k
3
votes
1
answer
62
views
1
answer
Can I use DESeq2 for special assays
deseq2 targeted sequencing written 4 days ago by jivarajivaraj • 10 • updated 4 days ago by Michael Love ♦ 21k
0
votes
1
answer
31
views
1
answer
DeSeq2 Design for multiple cell lines, medias, vectors
deseq2 written 4 days ago by jbard • 0 • updated 4 days ago by Michael Love ♦ 21k
0
votes
1
answer
55
views
1
answer
Deseq2 Multiple condition issue
deseq2 written 4 days ago by Jose Meseguer • 0 • updated 4 days ago by Michael Love ♦ 21k
1
vote
1
answer
46
views
1
answer
Request to create an organism package
annotation deseq2 written 4 days ago by estevemp • 0 • updated 4 days ago by James W. MacDonald ♦ 49k
1
vote
1
answer
102
views
1
answer
U-shape of p-value histograms is removed by filtering for genes that have >5 counts in >10% of samples before applying DESeq2 analysis
deseq2 p-value distribution u-shaped pre-filter low counts written 5 days ago by stu111538 • 0
3
votes
1
answer
67
views
1
answer
Using varianceStabilizingTransformation (VST) with no replications?
deseq2 written 5 days ago by nmgduan • 10 • updated 5 days ago by Michael Love ♦ 21k
1
vote
1
answer
35
views
1
answer
DESeq2 - lfcShrink with list contrast on grouped variable
deseq2 written 6 days ago by gcagle1 • 0 • updated 6 days ago by Michael Love ♦ 21k
1
vote
1
answer
64
views
1
answer
What can be done to separate the healthy and patient samples in PCA plot and Distance matrix
visualization deseq2 pcaplot written 6 days ago by Mithil Gaikwad • 0 • updated 6 days ago by Michael Love ♦ 21k
0
votes
1
answer
73
views
1
answer
DeSeq2 Ribosome Profiling: multiple factor design
deseq2 design timeseries written 6 days ago by indrik.wijaya • 0 • updated 6 days ago by Michael Love ♦ 21k
3
votes
1
answer
50
views
1
answer
Handling multiple knockout experiments with DESeq2
deseq2 written 7 days ago by cmfield • 0 • updated 7 days ago by Michael Love ♦ 21k
3
votes
1
answer
44
views
1
answer
How to plot the batch corrected values in DESeq2
normalization deseq2 written 8 days ago by dhwani.dholakia • 0 • updated 8 days ago by Michael Love ♦ 21k
0
votes
1
answer
53
views
1
answer
Error : Salmon tximport to DESeq2
deseq2 tximport written 8 days ago by saddamhusain77 • 0 • updated 8 days ago by Michael Love ♦ 21k
0
votes
1
answer
46
views
1
answer
DESeq2 standard error estimate (lfcSE)
deseq2 written 10 days ago by shintzen • 0 • updated 10 days ago by Michael Love ♦ 21k
1
vote
1
answer
55
views
1
answer
DESeq2: thousands of NA for pvalues?
deseq2 rna-seq degs cooks cutoff written 10 days ago by aishu.jp • 10 • updated 10 days ago by Michael Love ♦ 21k
0
votes
1
answer
52
views
1
answer
tximport error with kallisto .h5 files
deseq2 tximport kallisto written 10 days ago by steve.standage • 0 • updated 10 days ago by Michael Love ♦ 21k
1
vote
1
answer
58
views
1
answer
Using Salmon and DESeq2 to compare metagenomic content between samples
deseq2 salmon written 11 days ago by kballa • 0 • updated 10 days ago by Michael Love ♦ 21k
3
votes
1
answer
93
views
1
answer
DESeq2 Formula Design with two variables and individual normalization
deseq2 written 11 days ago by polyptwo • 0 • updated 10 days ago by Michael Love ♦ 21k
<prev • 2,138 results • page 1 of 86 • next >
Recent...
Replies
Votes
Awards • All »
Locations • All »
  • Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia, 21 minutes ago
  • United States, 1 hour ago
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 190 users visited in the last hour