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2
votes
7
answers
2.0k
views
7
answers
DESeq2 results with RUVSeq values
deseq2 ruvseq sizefacotrs written 3.0 years ago by Assa Yeroslaviz • 1.4k • updated 3.0 years ago by davide risso • 650
1
vote
6
answers
545
views
6
answers
A very large number of diffential genes
normalization deseq2 written 2.6 years ago by Gilgi • 20
6
votes
6
answers
911
views
6
answers
GOexpress: use DESeq2 data object as input
deseq2 expressionset goexpress written 2.5 years ago by martin.hoelzer • 20
14
votes
6
answers
1.9k
views
10 follow
6
answers
Diffbind: edgeR or DESeq2 ?
edger diffbind deseq2 medip-seq written 2.1 years ago by florian.noack • 60 • updated 5 months ago by Rory Stark • 2.4k
6
votes
5
answers
4.9k
views
5
answers
DESeq2 timecourse - How to set the experimental design
geneexpression timecourse deseq2 written 3.5 years ago by nafeesa • 10 • updated 3.5 years ago by Wolfgang Huber ♦ 13k
0
votes
5
answers
769
views
5
answers
DESEQ2 genes with large count variation do not show as differentially expressed
deseq2 written 2.6 years ago by sharvari gujja • 10
0
votes
5
answers
544
views
5
answers
DEXSeq - Error in estimateSizeFactorsForMatrix(featureCounts(object)
dexseq deseq2 alternative splicing written 2.6 years ago by Fahmi Nazarie • 0
2
votes
5
answers
685
views
5
answers
heatmap log2foldchange values
deseq2 written 2.2 years ago by John • 30
0
votes
5
answers
1.9k
views
5
answers
DESEQ2: apparently wrong log2(fold-change) calculation
deseq2 differential gene expression log2fc written 2.1 years ago by Osvaldo • 20
0
votes
5
answers
717
views
5
answers
DESeq: Error in model.matrix.formula(design(object), data = colData(object)) : data must be a data.frame
deseq2 written 2.1 years ago by mdelrgg • 0 • updated 22 months ago by Simon Anders • 3.4k
2
votes
5
answers
374
views
5
answers
Factoring analysis and better design
deseq deseq2 written 20 months ago by arabella23 • 0
0
votes
4
answers
1.8k
views
4
answers
DEseq for chip-seq data normalisation
deseq deseq2 written 4.5 years ago by Giuseppe Gallone • 170 • updated 4.5 years ago by Ying W • 90
0
votes
4
answers
1.4k
views
4
answers
Variance stabilizing transformation seems not working on NGS (bacterial 16srRNA based) data
microbiome deseq2 written 4.4 years ago by Michael Love ♦ 17k • updated 20 months ago by Wolfgang Huber ♦ 13k
0
votes
4
answers
1.3k
views
4
answers
GFOLD file as input for DESeq2
deseq2 written 3.6 years ago by alantb_cederj • 0
3
votes
4
answers
4.6k
views
4
answers
DESeq2 paired multifactor test
deseq2 paired written 3.5 years ago by hwillenbrock • 0
1
vote
4
answers
2.2k
views
4
answers
DESeq2: combine replicates following rlog transformation for visualization, clustering
rnaseq deseq2 written 3.5 years ago by snf • 0
0
votes
4
answers
771
views
4
answers
how to design the formular
deseq2 written 3.4 years ago by Emily20025322 • 0
1
vote
4
answers
5.6k
views
4
answers
Inputting counts of zero into DESeq2
deseq2 written 3.4 years ago by jport • 10 • updated 2.8 years ago by piensaglobalmente • 10
1
vote
4
answers
3.2k
views
4
answers
A couple of questions about baseMean, RPKM, and multi-factor analysis for DESeq2
deseq2 written 3.4 years ago by xfwang • 10
4
votes
4
answers
2.2k
views
4
answers
arrayQualityMetrics with DESeq2
arrayqualitymetrics deseq2 sample outliers written 3.3 years ago by rachelwright8 • 10
1
vote
4
answers
1.8k
views
4
answers
DESeq 2, interaction model design
deseq2 written 3.0 years ago by agbioinformatics • 0
1
vote
4
answers
673
views
4
answers
question about variance stabilizing transformation and size factors in DESeq2
deseq2 written 2.7 years ago by hanna.sinkko • 10
4
votes
4
answers
3.2k
views
6 follow
4
answers
Scaling genes to have unit variance for clustering / heatmaps with DESeq2
deseq2 heatmap.2 bicluster pheatmap written 2.6 years ago by tj.hu • 10 • updated 6 months ago by Michael Love ♦ 17k
1
vote
4
answers
2.1k
views
4
answers
DESeq2 - Error in estimateSizeFactorsForMatrix(counts(object)
deseq2 written 2.6 years ago by Fahmi Nazarie • 0
18
votes
4
answers
5.9k
views
4
answers
DESeq2 for ChIP-seq differential peaks
chipseq deseq deseq2 written 2.6 years ago by tangming2005 • 90 • updated 9 months ago by k.vitting.seerup • 20
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