15
votes
0
answers
4.4k
views
13 follow
0
answers
5
votes
1
answer
1.4k
views
9 follow
1
answer
14
votes
3
answers
4.8k
views
12 follow
3
answers
New function lfcShrink() in DESeq2
deseq2 written 13 months ago by Michael Love18k
3
votes
1
answer
1.3k
views
5 follow
1
answer
Using DESeq2: experimental design and extracting results
deseq deseq2 written 4.0 years ago by bio200160 • updated 4.0 years ago by Michael Love18k
8
votes
1
answer
4.7k
views
5 follow
1
answer
9
votes
2
answers
5.1k
views
10 follow
2
answers
4
votes
1
answer
2.5k
views
5 follow
1
answer
interpreting LRT results DESeq2
deseq2 rna-seq lrt written 3.2 years ago by solgakar@bi.technion.ac.il60 • updated 3.2 years ago by Michael Love18k
8
votes
1
answer
6.5k
views
8 follow
1
answer
DESEq2 comparison with mulitple cell types under 2 conditions
deseq2 multiple factor design written 3.1 years ago by kmu00430 • updated 3.1 years ago by Michael Love18k
3
votes
1
answer
1.8k
views
5 follow
1
answer
DeSeq2 - hill–shaped histogram of pvalues
deseq2 pvalue histogram written 2.8 years ago by deut1370 • updated 2.8 years ago by Bernd Klaus480
13
votes
2
answers
1.5k
views
8 follow
2
answers
14
votes
6
answers
2.1k
views
10 follow
6
answers
Diffbind: edgeR or DESeq2 ?
edger diffbind deseq2 medip-seq written 2.3 years ago by florian.noack60 • updated 7 months ago by Rory Stark2.5k
3
votes
1
answer
454
views
6 follow
1
answer
7
votes
1
answer
774
views
6 follow
1
answer
4
votes
2
answers
246
views
7 follow
2
answers
Incredibly high/low foldChange
deseq2 written 3 months ago by jovel_juan10
6
votes
1
answer
1.4k
views
5 follow
1
answer
1
vote
1
answer
1.8k
views
1
answer
pre-ranked GSEA within R? + Best DESeq2/limma-voom metric?
deseq2 written 4.4 years ago by Gordon Smyth33k • updated 4.4 years ago by Jose M Garcia Manteiga310
1
vote
2
answers
762
views
2
answers
2
votes
2
answers
6.1k
views
2
answers
DESeq2: Paired Test
deseq deseq2 written 4.2 years ago by Pankaj Agarwal100
1
vote
1
answer
992
views
1
answer
DESeq2 Regularised Log for Clustering of Genes
clustering deseq2 written 4.1 years ago by Michael Love18k • updated 4.1 years ago by Simon Anders3.5k
1
vote
1
answer
6.0k
views
1
answer
DESeq2 - paired sample, interaction and fold change
deseq2 written 4.0 years ago by samuel collombet120 • updated 4.0 years ago by Michael Love18k
1
vote
1
answer
923
views
1
answer
DESeq2: nested multi-factor design, singular matrix error
deseq2 written 3.9 years ago by BJ Chen60 • updated 3.9 years ago by Michael Love18k
1
vote
1
answer
1.3k
views
1
answer
Using DESeq2: experimental design and extracting results
visualization deseq deseq2 written 3.9 years ago by bio200160 • updated 3.9 years ago by Michael Love18k
1
vote
1
answer
1.2k
views
1
answer
Multifactor model design for DE analysis (DESeq2 & edgeR)
cancer edger deseq2 written 3.8 years ago by Mathieu Bahin30 • updated 3.8 years ago by Simon Anders3.5k
3
votes
1
answer
1.4k
views
6 follow
1
answer
2
votes
2
answers
1.0k
views
2
answers
deseq2: coding 2x2 design
deseq deseq2 written 3.6 years ago by evakfisch10
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