19
votes
0
answers
5.2k
views
21 follow
0
answers
16
votes
3
answers
7.1k
views
16 follow
3
answers
New function lfcShrink() in DESeq2
deseq2 written 19 months ago by Michael Love20k
7
votes
1
answer
2.3k
views
14 follow
1
answer
11
votes
2
answers
5.9k
views
11 follow
2
answers
9
votes
1
answer
8.7k
views
10 follow
1
answer
DESEq2 comparison with mulitple cell types under 2 conditions
deseq2 multiple factor design written 3.6 years ago by kmu00440 • updated 3.6 years ago by Michael Love20k
14
votes
6
answers
2.6k
views
10 follow
6
answers
Diffbind: edgeR or DESeq2 ?
edger diffbind deseq2 medip-seq written 2.7 years ago by florian.noack60 • updated 13 months ago by Rory Stark2.6k
12
votes
3
answers
10k
views
9 follow
3
answers
Batch correction in DESeq2
rnaseq deseq2 combat removebatcheffect() batch effect written 3.0 years ago by AB30 • updated 2.5 years ago by adam0
8
votes
1
answer
20k
views
8 follow
1
answer
DESeq2 output explanation
deseq deseq2 written 4.1 years ago by francesca.defilippis60 • updated 4.1 years ago by Michael Love20k
10
votes
2
answers
12k
views
8 follow
2
answers
deseq2 filter the low counts
deseq2 lowcount written 3.8 years ago by aristotele_m20 • updated 2.2 years ago by pkachroo10
13
votes
2
answers
1.9k
views
8 follow
2
answers
9
votes
2
answers
4.0k
views
7 follow
2
answers
Deseq2 error estimating size factors -- zeros in count matrix
deseq2 estimatesizefactors written 2.9 years ago by ssabri20 • updated 2.9 years ago by Michael Love20k
9
votes
1
answer
3.1k
views
7 follow
1
answer
9
votes
1
answer
6.6k
views
7 follow
1
answer
DESeq2 and shrinkage of log2 fold changes
deseq2 written 2.9 years ago by riccardo70 • updated 2.9 years ago by Michael Love20k
12
votes
1
answer
829
views
7 follow
1
answer
19
votes
2
answers
4.3k
views
7 follow
2
answers
Usability of ERCC spike-ins in standard RNAseq experiments
rnaseq deseq2 ercc written 2.1 years ago by mbeckste20 • updated 2.1 years ago by Simon Anders3.5k
8
votes
2
answers
878
views
7 follow
2
answers
4
votes
2
answers
388
views
7 follow
2
answers
Incredibly high/low foldChange
deseq2 written 9 months ago by jovel_juan10
3
votes
1
answer
1.9k
views
6 follow
1
answer
10
votes
3
answers
6.9k
views
6 follow
3
answers
DESeq2: add annotations (from data frame) to DESeqDataSet
annotation deseq2 granges written 4.1 years ago by Darya Vanichkina100 • updated 2.9 years ago by bioprog0
2
votes
3
answers
8.2k
views
6 follow
3
answers
DEseq2 time-series design.
timecourse deseq2 design written 4.1 years ago by shao80 • updated 3.6 years ago by lmolla10
10
votes
2
answers
6.9k
views
6 follow
2
answers
5
votes
2
answers
25k
views
6 follow
2
answers
[DESEQ2] How to access the normalized data of a DESeqDataSet
deseq2 written 3.7 years ago by john50 • updated 3.7 years ago by Steve Lianoglou12k
3
votes
3
answers
2.2k
views
6 follow
3
answers
3
votes
7
answers
2.4k
views
6 follow
7
answers
DESeq2 results with RUVSeq values
deseq2 ruvseq sizefacotrs written 3.6 years ago by Assa Yeroslaviz1.4k • updated 3.6 years ago by davide risso780
4
votes
1
answer
2.2k
views
6 follow
1
answer
DeSeq2 - hill–shaped histogram of pvalues
deseq2 pvalue histogram written 3.3 years ago by deut1370 • updated 3.3 years ago by Bernd Klaus520
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