16
votes
0
answers
4.5k
views
16 follow
0
answers
14
votes
3
answers
4.9k
views
12 follow
3
answers
New function lfcShrink() in DESeq2
deseq2 written 13 months ago by Michael Love18k
9
votes
2
answers
5.1k
views
10 follow
2
answers
9
votes
1
answer
6.5k
views
10 follow
1
answer
DESEq2 comparison with mulitple cell types under 2 conditions
deseq2 multiple factor design written 3.1 years ago by kmu00440 • updated 3.1 years ago by Michael Love18k
14
votes
6
answers
2.1k
views
10 follow
6
answers
Diffbind: edgeR or DESeq2 ?
edger diffbind deseq2 medip-seq written 2.3 years ago by florian.noack60 • updated 7 months ago by Rory Stark2.5k
5
votes
1
answer
1.5k
views
9 follow
1
answer
13
votes
2
answers
1.5k
views
8 follow
2
answers
9
votes
2
answers
8.5k
views
7 follow
2
answers
deseq2 filter the low counts
deseq2 lowcount written 3.3 years ago by aristotele_m20 • updated 21 months ago by pkachroo10
10
votes
3
answers
7.3k
views
7 follow
3
answers
Batch correction in DESeq2
rnaseq deseq2 combat removebatcheffect() batch effect written 2.5 years ago by AB10 • updated 2.1 years ago by adam0
9
votes
2
answers
3.2k
views
7 follow
2
answers
Deseq2 error estimating size factors -- zeros in count matrix
deseq2 estimatesizefactors written 2.5 years ago by ssabri20 • updated 2.5 years ago by Michael Love18k
9
votes
1
answer
2.5k
views
7 follow
1
answer
12
votes
1
answer
704
views
7 follow
1
answer
19
votes
2
answers
3.4k
views
7 follow
2
answers
Usability of ERCC spike-ins in standard RNAseq experiments
rnaseq deseq2 ercc written 20 months ago by mbeckste20 • updated 20 months ago by Simon Anders3.5k
4
votes
2
answers
253
views
7 follow
2
answers
Incredibly high/low foldChange
deseq2 written 3 months ago by jovel_juan10
3
votes
1
answer
1.4k
views
6 follow
1
answer
10
votes
3
answers
5.6k
views
6 follow
3
answers
DESeq2: add annotations (from data frame) to DESeqDataSet
annotation deseq2 granges written 3.6 years ago by Darya Vanichkina90 • updated 2.4 years ago by bioprog0
3
votes
3
answers
1.9k
views
6 follow
3
answers
4
votes
4
answers
3.5k
views
6 follow
4
answers
18
votes
2
answers
2.9k
views
6 follow
2
answers
3
votes
1
answer
455
views
6 follow
1
answer
7
votes
1
answer
785
views
6 follow
1
answer
8
votes
2
answers
466
views
6 follow
2
answers
0
votes
2
answers
742
views
5 follow
2
answers
DESeq2 : NA p values reported
deseq2 written 4.6 years ago by Abhishek Pratap160 • updated 4.6 years ago by array chip350
6
votes
1
answer
1.4k
views
5 follow
1
answer
3
votes
1
answer
1.3k
views
5 follow
1
answer
Using DESeq2: experimental design and extracting results
deseq deseq2 written 4.0 years ago by bio200160 • updated 4.0 years ago by Michael Love18k
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