15
votes
0
answers
3.8k
views
13 follow
0
answers
14
votes
6
answers
1.5k
views
10 follow
6
answers
Diffbind: edgeR or DESeq2 ?
edger diffbind deseq2 medip-seq written 20 months ago by florian.noack60 • updated 23 days ago by Rory Stark2.1k
8
votes
2
answers
4.3k
views
9 follow
2
answers
5
votes
1
answer
701
views
9 follow
1
answer
8
votes
1
answer
4.1k
views
8 follow
1
answer
DESEq2 comparison with mulitple cell types under 2 conditions
deseq2 multiple factor design written 2.5 years ago by kmu00430 • updated 2.5 years ago by Michael Love15k
10
votes
3
answers
2.4k
views
8 follow
3
answers
New function lfcShrink() in DESeq2
deseq2 written 6 months ago by Michael Love15k
8
votes
3
answers
4.3k
views
7 follow
3
answers
Batch correction in DESeq2
rnaseq deseq2 combat removebatcheffect() batch effect written 23 months ago by AB0 • updated 18 months ago by adam0
9
votes
2
answers
2.3k
views
7 follow
2
answers
Deseq2 error estimating size factors -- zeros in count matrix
deseq2 estimatesizefactors written 22 months ago by ssabri10 • updated 22 months ago by Michael Love15k
9
votes
1
answer
1.9k
views
7 follow
1
answer
3
votes
1
answer
1.1k
views
6 follow
1
answer
9
votes
3
answers
4.0k
views
6 follow
3
answers
DESeq2: add annotations (from data frame) to DESeqDataSet
annotation deseq2 granges written 3.1 years ago by Darya Vanichkina90 • updated 22 months ago by bioprog0
3
votes
3
answers
1.6k
views
6 follow
3
answers
4
votes
4
answers
2.6k
views
6 follow
4
answers
12
votes
2
answers
1.1k
views
6 follow
2
answers
11
votes
1
answer
491
views
6 follow
1
answer
3
votes
1
answer
364
views
6 follow
1
answer
18
votes
2
answers
2.6k
views
6 follow
2
answers
Usability of ERCC spike-ins in standard RNAseq experiments
rnaseq deseq2 ercc written 13 months ago by mbeckste20 • updated 13 months ago by Simon Anders3.4k
8
votes
2
answers
196
views
6 follow
2
answers
0
votes
2
answers
597
views
5 follow
2
answers
DESeq2 : NA p values reported
deseq2 written 4.0 years ago by Abhishek Pratap160 • updated 4.0 years ago by array chip340
3
votes
1
answer
1.1k
views
5 follow
1
answer
Using DESeq2: experimental design and extracting results
deseq deseq2 written 3.5 years ago by bio200160 • updated 3.5 years ago by Michael Love15k
2
votes
3
answers
5.0k
views
5 follow
3
answers
DEseq2 time-series design.
timecourse deseq2 design written 3.1 years ago by shao80 • updated 2.5 years ago by lmolla0
7
votes
2
answers
1.5k
views
5 follow
2
answers
6
votes
3
answers
3.8k
views
5 follow
3
answers
DESeq2 baseMean values for each sample
deseq2 written 3.0 years ago by aburkha6920
3
votes
2
answers
5.9k
views
5 follow
2
answers
deseq2 filter the low counts
deseq2 lowcount written 2.7 years ago by aristotele_m10 • updated 14 months ago by pkachroo10
10
votes
1
answer
1.6k
views
5 follow
1
answer
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