3
votes
2
answers
16k
views
2
answers
[DESEQ2] How to access the normalized data of a DESeqDataSet
deseq2 written 2.8 years ago by john40 • updated 2.8 years ago by Steve Lianoglou12k
3
votes
1
answer
11k
views
1
answer
DESeq2 output explanation
deseq deseq2 written 3.2 years ago by francesca.defilippis40 • updated 3.2 years ago by Michael Love15k
5
votes
2
answers
6.4k
views
5 follow
2
answers
deseq2 filter the low counts
deseq2 lowcount written 2.9 years ago by aristotele_m20 • updated 15 months ago by pkachroo10
2
votes
2
answers
6.0k
views
2
answers
9
votes
2
answers
5.7k
views
2
answers
FDR and padj in deseq and edger
edger deseq2 written 2.2 years ago by tonja.r40 • updated 2.2 years ago by Gordon Smyth32k
1
vote
1
answer
5.5k
views
1
answer
DESeq2 - paired sample, interaction and fold change
deseq2 written 3.6 years ago by samuel collombet110 • updated 3.6 years ago by Michael Love15k
3
votes
2
answers
5.5k
views
2
answers
Group comparison in DESeq2
deseq2 results written 2.4 years ago by jjinhyoungkim10 • updated 2.4 years ago by Michael Love15k
6
votes
3
answers
5.4k
views
3
answers
2
votes
3
answers
5.3k
views
5 follow
3
answers
DEseq2 time-series design.
timecourse deseq2 design written 3.2 years ago by shao80 • updated 2.7 years ago by lmolla0
2
votes
2
answers
5.2k
views
2
answers
DESeq2: Paired Test
deseq deseq2 written 3.8 years ago by Pankaj Agarwal100
0
votes
1
answer
5.2k
views
1
answer
3D PCA Plot of RNA-seq Data using plotPCA from within DESeq2
rnaseq deseq2 pca written 2.8 years ago by erin.gill8130 • updated 2.8 years ago by Michael Love15k
5
votes
2
answers
5.2k
views
2
answers
18
votes
4
answers
5.1k
views
4
answers
DESeq2 for ChIP-seq differential peaks
chipseq deseq deseq2 written 2.4 years ago by tangming200590 • updated 6 months ago by k.vitting.seerup20
2
votes
2
answers
5.1k
views
2
answers
Report and compare log2FC vs FC
deseq2 logfc written 2.8 years ago by Catalina Aguilar Hurtado50 • updated 2.8 years ago by smoorthie10
6
votes
1
answer
5.1k
views
1
answer
DESeq2 baseMean counts
deseq2 written 2.1 years ago by zpingfeng0 • updated 2.1 years ago by Michael Love15k
1
vote
4
answers
5.0k
views
4
answers
Inputting counts of zero into DESeq2
deseq2 written 3.2 years ago by jport10 • updated 2.6 years ago by piensaglobalmente10
5
votes
1
answer
5.0k
views
1
answer
8
votes
3
answers
5.0k
views
7 follow
3
answers
Batch correction in DESeq2
rnaseq deseq2 combat removebatcheffect() batch effect written 2.1 years ago by AB0 • updated 19 months ago by adam0
1
vote
1
answer
4.9k
views
1
answer
0
votes
1
answer
4.8k
views
1
answer
logfoldStandard Error and wald-statistics in DESeq2 results
deseq2 wald written 2.9 years ago by deena10 • updated 2.9 years ago by Michael Love15k
1
vote
2
answers
4.7k
views
2
answers
Integrating DESeq2 and TopGO for Enrichment
rnaseq go deseq2 R written 2.9 years ago by nw3280 • updated 2.9 years ago by Bernd Klaus480
8
votes
1
answer
4.6k
views
8 follow
1
answer
DESEq2 comparison with mulitple cell types under 2 conditions
deseq2 multiple factor design written 2.7 years ago by kmu00430 • updated 2.7 years ago by Michael Love15k
6
votes
5
answers
4.6k
views
5
answers
DESeq2 timecourse - How to set the experimental design
geneexpression timecourse deseq2 written 3.3 years ago by nafeesa10 • updated 3.3 years ago by Wolfgang Huber13k
2
votes
2
answers
4.6k
views
2
answers
9
votes
2
answers
4.5k
views
10 follow
2
answers
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