5
votes
2
answers
23k
views
5 follow
2
answers
[DESEQ2] How to access the normalized data of a DESeqDataSet
deseq2 written 3.6 years ago by john40 • updated 3.6 years ago by Steve Lianoglou12k
5
votes
1
answer
18k
views
5 follow
1
answer
DESeq2 output explanation
deseq deseq2 written 3.9 years ago by francesca.defilippis40 • updated 3.9 years ago by Michael Love19k
9
votes
2
answers
11k
views
7 follow
2
answers
deseq2 filter the low counts
deseq2 lowcount written 3.6 years ago by aristotele_m20 • updated 2.1 years ago by pkachroo10
10
votes
2
answers
9.6k
views
2
answers
FDR and padj in deseq and edger
edger deseq2 written 3.0 years ago by tonja.r40 • updated 3.0 years ago by Gordon Smyth35k
5
votes
2
answers
9.6k
views
2
answers
Group comparison in DESeq2
deseq2 results written 3.2 years ago by jjinhyoungkim20 • updated 3.2 years ago by Michael Love19k
6
votes
1
answer
9.5k
views
1
answer
DESeq2 baseMean counts
deseq2 written 2.9 years ago by zpingfeng0 • updated 2.9 years ago by Michael Love19k
2
votes
1
answer
9.3k
views
1
answer
Normalization in DESeq2
deseq deseq2 written 3.8 years ago by solgakar@bi.technion.ac.il60 • updated 3.8 years ago by Michael Love19k
10
votes
3
answers
9.3k
views
7 follow
3
answers
Batch correction in DESeq2
rnaseq deseq2 combat removebatcheffect() batch effect written 2.8 years ago by AB10 • updated 2.4 years ago by adam0
7
votes
3
answers
8.9k
views
3
answers
4
votes
2
answers
8.1k
views
2
answers
Report and compare log2FC vs FC
deseq2 logfc written 3.6 years ago by Catalina Aguilar Hurtado50 • updated 3.6 years ago by smoorthie10
9
votes
1
answer
8.0k
views
10 follow
1
answer
DESEq2 comparison with mulitple cell types under 2 conditions
deseq2 multiple factor design written 3.4 years ago by kmu00440 • updated 3.4 years ago by Michael Love19k
2
votes
2
answers
7.8k
views
2
answers
2
votes
3
answers
7.6k
views
6 follow
3
answers
DEseq2 time-series design.
timecourse deseq2 design written 4.0 years ago by shao80 • updated 3.4 years ago by lmolla10
0
votes
1
answer
7.1k
views
1
answer
logfoldStandard Error and wald-statistics in DESeq2 results
deseq2 wald written 3.6 years ago by deena10 • updated 3.6 years ago by Michael Love19k
2
votes
2
answers
7.1k
views
5 follow
2
answers
Integrating DESeq2 and TopGO for Enrichment
rnaseq go deseq2 R written 3.7 years ago by nw32810 • updated 3.7 years ago by Bernd Klaus520
18
votes
4
answers
6.9k
views
4
answers
DESeq2 for ChIP-seq differential peaks
chipseq deseq deseq2 written 3.1 years ago by tangming200590 • updated 15 months ago by k.vitting.seerup20
2
votes
2
answers
6.8k
views
2
answers
DESeq2: Paired Test
deseq deseq2 written 4.5 years ago by Pankaj Agarwal100
0
votes
1
answer
6.7k
views
1
answer
3D PCA Plot of RNA-seq Data using plotPCA from within DESeq2
rnaseq deseq2 pca written 3.5 years ago by erin.gill8130 • updated 3.5 years ago by Michael Love19k
8
votes
2
answers
6.6k
views
2
answers
1
vote
4
answers
6.6k
views
4
answers
Inputting counts of zero into DESeq2
deseq2 written 3.9 years ago by jport10 • updated 3.3 years ago by piensaglobalmente10
10
votes
3
answers
6.5k
views
6 follow
3
answers
DESeq2: add annotations (from data frame) to DESeqDataSet
annotation deseq2 granges written 4.0 years ago by Darya Vanichkina100 • updated 2.8 years ago by bioprog0
2
votes
2
answers
6.5k
views
5 follow
2
answers
DESeq2 FPKM normalization
normalization deseq2 written 2.7 years ago by riccardo50
1
vote
1
answer
6.5k
views
1
answer
With DESeq2 "Not full rank" Error with design ~ line + time + condition
deseq deseq2 written 3.7 years ago by c.lieftink@nki.nl20 • updated 3.7 years ago by Michael Love19k
15
votes
3
answers
6.5k
views
14 follow
3
answers
New function lfcShrink() in DESeq2
deseq2 written 17 months ago by Michael Love19k
2
votes
1
answer
6.4k
views
1
answer
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