15
votes
0
answers
4.4k
views
13 follow
0
answers
14
votes
3
answers
4.9k
views
12 follow
3
answers
New function lfcShrink() in DESeq2
deseq2 written 13 months ago by Michael Love18k
8
votes
1
answer
684
views
1
answer
Updated DESeq2 performance on highly replicated yeast RNA-seq data
deseq2 written 2.2 years ago by Michael Love18k • updated 2.2 years ago by James W. MacDonald46k
8
votes
1
answer
4.7k
views
5 follow
1
answer
10
votes
1
answer
2.0k
views
5 follow
1
answer
Bootstrap confidence intervals on RNA-seq expression from Kallisto
rnaseq limma edger deseq2 voom written 3.0 years ago by Sean Davis21k • updated 9 months ago by Paul Harrison60
18
votes
2
answers
1.3k
views
2
answers
13
votes
2
answers
1.5k
views
8 follow
2
answers
14
votes
6
answers
2.1k
views
10 follow
6
answers
Diffbind: edgeR or DESeq2 ?
edger diffbind deseq2 medip-seq written 2.3 years ago by florian.noack60 • updated 7 months ago by Rory Stark2.5k
6
votes
1
answer
1.4k
views
5 follow
1
answer
4
votes
1
answer
2.5k
views
5 follow
1
answer
interpreting LRT results DESeq2
deseq2 rna-seq lrt written 3.2 years ago by solgakar@bi.technion.ac.il60 • updated 3.2 years ago by Michael Love18k
8
votes
1
answer
6.5k
views
8 follow
1
answer
DESEq2 comparison with mulitple cell types under 2 conditions
deseq2 multiple factor design written 3.1 years ago by kmu00430 • updated 3.1 years ago by Michael Love18k
10
votes
1
answer
1.1k
views
5 follow
1
answer
9
votes
1
answer
2.5k
views
7 follow
1
answer
18
votes
2
answers
2.9k
views
6 follow
2
answers
3
votes
2
answers
453
views
2
answers
DESeq2 with contaminating cell types
deseq2 rna-seq written 17 months ago by hughes.drew90 • updated 17 months ago by Michael Love18k
7
votes
1
answer
782
views
6 follow
1
answer
6
votes
1
answer
1.4k
views
1
answer
5
votes
1
answer
1.5k
views
9 follow
1
answer
3
votes
2
answers
683
views
2
answers
DESeqDataSetFromTximport with kallisto abundances.
deseq2 tximport written 12 months ago by ben30 • updated 8 months ago by Ming Wang0
2
votes
2
answers
6.1k
views
2
answers
DESeq2: Paired Test
deseq deseq2 written 4.2 years ago by Pankaj Agarwal100
2
votes
3
answers
3.3k
views
3
answers
DESeq2 Error in estimateSizeFactorsForMatrix
sequencing alignment deseq deseq2 written 4.1 years ago by Guest User12k • updated 3.0 years ago by gaelgarcia0
3
votes
1
answer
1.3k
views
5 follow
1
answer
Using DESeq2: experimental design and extracting results
deseq deseq2 written 4.0 years ago by bio200160 • updated 4.0 years ago by Michael Love18k
3
votes
1
answer
1.4k
views
6 follow
1
answer
10
votes
3
answers
5.5k
views
6 follow
3
answers
DESeq2: add annotations (from data frame) to DESeqDataSet
annotation deseq2 granges written 3.6 years ago by Darya Vanichkina90 • updated 2.4 years ago by bioprog0
3
votes
1
answer
15k
views
1
answer
DESeq2 output explanation
deseq deseq2 written 3.6 years ago by francesca.defilippis40 • updated 3.6 years ago by Michael Love18k
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