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DESeq2 testing ratio of ratios (RIP-Seq, CLIP-Seq, ribosomal profiling)
deseq2 written 4.7 years ago by Michael Love ♦ 23k
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Multiple alignments (multi-mapped reads) and DESeq/edgeR pipeline
edger deseq deseq2 tophat bowtie written 4.0 years ago by ysdel • 30
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All Pairwise Comparisons with DESeq2 While Controlling for Batch Effects: Does Reference Level Matter?
deseq2 differential expression design batch correction written 2 days ago by wunderl • 10
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deseq2
deseq deseq2 written 6.2 years ago by Michael Love ♦ 23k
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BioC 2013: Talks and Workshops
visualization cancer ovarian dexseq deseq2 basespacer written 6.0 years ago by Martin Morgan ♦♦ 23k
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BioC 2013, July 17 (Developer Day) 18-19: 'Early' registration deadline July 1
cheminformatics visualization cancer ovarian dexseq minfi deseq2 basespacer epivizr written 6.0 years ago by Martin Morgan ♦♦ 23k
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error in "count" for SummarizedExperiment in easyRNASeq
easyrnaseq deseq2 written 5.8 years ago by Lescai, Francesco • 380
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DESeq2 with GAGE
pathways cycle gage deseq2 pathview written 5.6 years ago by Luo Weijun • 1.4k
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Inquiries about fitType on DESeq2
regression deseq2 written 5.6 years ago by Michael Love ♦ 23k
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DESeq2 high fold change values for comparison of samples with zero counts
go deseq2 written 5.4 years ago by Michael Love ♦ 23k
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356
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significant differential genes disappear after including a covariance
deseq2 written 5.4 years ago by Michael Love ♦ 23k
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952
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goseq: pwf: Error in if (hi <= low) { : missing value where TRUE/FALSE needed
rnaseq go goseq deseq2 written 5.3 years ago by 刘鹏飞 • 80
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DESeq2 preprint
deseq2 written 5.3 years ago by Michael Love ♦ 23k
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FW: using DESeq2 with multi factor data
deseq2 written 5.3 years ago by solgakar@bi.technion.ac.il • 60
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DiffBind (Please add me to the Dropbox containing the vignette data)
glad edger diffbind deseq2 written 5.2 years ago by Rory Stark • 2.8k
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edgeR and DESeq2: model design and estimation of dispersion
limma edger deseq2 written 5.0 years ago by Gordon Smyth ♦ 37k
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questions about gage
gage deseq2 written 4.8 years ago by Luo Weijun • 1.4k
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edgeR: mixing technical replicates from Illumina HiSeq and MiSeq
sequencing alignment go edger deseq2 written 4.8 years ago by Gordon Smyth ♦ 37k
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Error when counting reads in genes with summarizeOverlaps (Genomic-Aligments package)
rnaseq deseq2 genomicalignments summarizeoverlaps tophat written 4.6 years ago by alejandro.colaneri • 20 • updated 4.6 years ago by Dan Tenenbaum • 8.2k
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How to design formula in DESeq2 when setting blind=FALSE in rlog transformation?
normalization deseq2 written 4.6 years ago by Xianjun Dong • 0
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998
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meta-analysis of RNA-seq data
deseq2 rna-seq written 4.3 years ago by anpham • 0
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DESeq2 Log2 Fold Change values do not match up between my Rank List and my MA Plot
deseq2 rna-seq written 4.0 years ago by ejmcmaho • 0 • updated 4.0 years ago by Dario Strbenac • 1.4k
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GenomicFeatures error: rsqlite_query_send: could not execute1: database or disk is full
rnaseq genomicfeatures deseq2 written 3.9 years ago by Xiaokuan Wei • 230
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800
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How to fully use the list of DEGs in non model species?
rnaseq gage deseq2 ebseq written 3.9 years ago by jackipchiho • 10
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Diffrential expression analysis of human vs. mouse
deseq2 differential gene expression cuffdiff written 3.9 years ago by Assa Yeroslaviz • 1.4k
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