Showing: deseq2reset
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New function lfcShrink() in DESeq2
deseq2 written 2.3 years ago by Michael Love24k • updated 8 days ago by Micheal Stark0
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TMM Normalization: DESeqDataSet: some values in assay are negative
normalization deseq deseq2 written 4 weeks ago by neekonsu0 • updated 16 days ago by wunderl20
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Questions for ResultsNames() and the Contrast function
deseq2 written 29 days ago by dennism92510 • updated 29 days ago by Michael Love24k
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106
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What can I do if I only have TPM but not raw counts data?
deseq2 written 29 days ago by Di Yang0 • updated 29 days ago by Steve Lianoglou12k
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DESeq2: Error when correcting batch effect
deseq2 batch effect written 29 days ago by Rimma0 • updated 29 days ago by Michael Love24k
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79
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Random effects in DESeq2
deseq2 written 29 days ago by c.taylor0 • updated 29 days ago by Michael Love24k
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RNAseq and heatmap
deseq2 rna-seq heatmap written 28 days ago by Merlin 10 • updated 28 days ago by Michael Love24k
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deseq2 formula design
deseq2 written 28 days ago by nabiyogesh0 • updated 28 days ago by swbarnes2240
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too few replicates to observe statistically significant differences
deseq2 written 28 days ago by dennism92510 • updated 28 days ago by Michael Love24k
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91
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Interpretation of the heatmap produced by DESeq2
deseq2 written 27 days ago by yh3620 • updated 27 days ago by Michael Love24k
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103
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2
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DESeq2: Sample outlier patterns 'switching' after normalization
normalization deseq2 written 26 days ago by wunderl20 • updated 26 days ago by Michael Love24k
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3
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Heatmap of selected genes
rnaseq deseq2 heatmap degs written 24 days ago by danikadigiacomo0 • updated 24 days ago by mikhael.manurung160
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Extract residuals from DESeq2 fit
deseq2 residuals written 24 days ago by MWSchmid0 • updated 23 days ago by Michael Love24k
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4
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DESeq2 for multiple groups
deseq2 written 23 days ago by ijvechetti0 • updated 23 days ago by Steve Lianoglou12k
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could the result of DEseq2 by LRT be used in SPIA directly?
deseq2 written 22 days ago by qq8098257060 • updated 22 days ago by Michael Love24k
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Filtering extraneous samples affects DESeq results. What is going on?
deseq deseq2 written 22 days ago by sxv0 • updated 22 days ago by Michael Love24k
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