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Assessing the influence of covariates on RNA-seq in DESeq2
deseq2 glm covariates rna-sequencing written 16 minutes ago by rmash • 0
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DESEQ2 for circRNA normalisation
deseq2 circrna normalisation written 7 hours ago by zoe.ward • 0
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Removal of batch effects from RNA-seq data for WGCNA
limma deseq2 wgcna ruvseq written 27 days ago by ag1805x • 20
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DEseq2 loading library problem
deseq2 written 8 weeks ago by shilabr • 0 • updated 8 weeks ago by Martin Morgan ♦♦ 24k
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Extracting VST matrix with batch effects removed
deseq2 batchcorrection written 10 weeks ago by A • 40
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News: Course in Berlin- Genomics with R and Bioconductor - September 16-20
limma edger deseq2 news written 4 months ago by info • 0
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Including sva results in SeqGSEA with data with batch effect
limma deseq sva deseq2 seqgsea written 5 months ago by kentfung • 0
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How to analyze RNAseq data with multiple treatment groups and each subject has pre and post-treatment measures using deseq2/edger/limma?
limma edger deseq2 tutorial written 9 months ago by wwu222 • 0 • updated 9 months ago by Michael Love ♦ 26k
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News: Bioinformatics Summer School - July 2019 - UCLouvain (Belgium)
rnaseq proteomics deseq2 news workshop transcriptomics written 9 months ago by Laurent Gatto ♦ 1.2k
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diffbind: use of continuous variables
diffbind deseq2 written 10 months ago by janani.sundaresan • 0
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Converting DESeq2 results to DiffBind object
diffbind deseq2 written 13 months ago by rbronste • 60
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Keep getting NaN Values in GAGE analysis of KEGG pathways
gage deseq2 R kegg nan written 13 months ago by owen.donohoe • 0
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Changing vertical scale to linear for expression reporting of DESeqDataSet
reportingtools deseq2 written 15 months ago by trebbiano • 0
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2x2 design - UP means more expression on S than R and DOWN less expression on S than R?
deseq2 2x2 written 18 months ago by filipematias23 • 0 • updated 18 months ago by Michael Love ♦ 26k
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DEseq2 Replicate Not Normalizing
normalization deseq2 written 18 months ago by mpw183 • 0
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differential expression analysis with big dataset and >500 surrogate variables
sva deseq2 differential expression lrt written 19 months ago by aec • 50
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How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.
deseq2 tcga written 19 months ago by kcl • 0 • updated 19 months ago by Michael Love ♦ 26k
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Normalise counts when tumour samples have normal tissue contamination.
rnaseq edger deseq deseq2 htseqcounts written 22 months ago by Deepali • 0
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How to call "DBA_CONDITION" for mutiple conditions and How to control GLM program
cancer edger deseq2 dba conditions written 22 months ago by arcucamila • 0
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DESeq2 - GAGE workflow
deseq2 gage package written 2.4 years ago by sup230 • 30
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DESeq2 Differential Abundance with non-OTU data (e.g. PICRUSt)
deseq2 picrust written 2.7 years ago by handibles • 10
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DESeq2 - differentially expressed genes for each sample
rnaseq deseq2 written 2.9 years ago by norty89 • 0
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Design formula for use with DESeq2 with SVA
sva deseq2 written 3.0 years ago by brookb • 0
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Select what conditionsto graph in Report tools with Deseq containing multiple conditions
reportingtools deseq2 ggplot2 written 3.1 years ago by abass.conteh • 0
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Inclusion of non-coding portions of transcripts (UTR-regions and introns) within the DEX-seq dataset
dexseq deseq2 differential exon usage written 3.2 years ago by ste.depo • 0
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