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How to analyze RNAseq data with multiple treatment groups and each subject has pre and post-treatment measures using deseq2/edger/limma?
limma edger deseq2 tutorial written 3 months ago by wwu222 • 0 • updated 3 months ago by Michael Love ♦ 24k
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News: Bioinformatics Summer School - July 2019 - UCLouvain (Belgium)
rnaseq proteomics deseq2 news workshop transcriptomics written 3 months ago by Laurent Gatto ♦ 1.1k
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diffbind: use of continuous variables
diffbind deseq2 written 4 months ago by janani.sundaresan • 0
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Converting DESeq2 results to DiffBind object
diffbind deseq2 written 7 months ago by rbronste • 60
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Keep getting NaN Values in GAGE analysis of KEGG pathways
gage deseq2 R kegg nan written 7 months ago by owen.donohoe • 0
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Changing vertical scale to linear for expression reporting of DESeqDataSet
reportingtools deseq2 written 9 months ago by trebbiano • 0
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2x2 design - UP means more expression on S than R and DOWN less expression on S than R?
deseq2 2x2 written 12 months ago by filipematias23 • 0 • updated 12 months ago by Michael Love ♦ 24k
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DEseq2 Replicate Not Normalizing
normalization deseq2 written 12 months ago by mpw183 • 0
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differential expression analysis with big dataset and >500 surrogate variables
sva deseq2 differential expression lrt written 13 months ago by aec • 40
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How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.
deseq2 tcga written 13 months ago by kcl • 0 • updated 13 months ago by Michael Love ♦ 24k
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Normalise counts when tumour samples have normal tissue contamination.
rnaseq edger deseq deseq2 htseqcounts written 16 months ago by Deepali • 0
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How to call "DBA_CONDITION" for mutiple conditions and How to control GLM program
cancer edger deseq2 dba conditions written 16 months ago by arcucamila • 0
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DESeq2 - GAGE workflow
deseq2 gage package written 22 months ago by sup230 • 30
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DESeq2 Differential Abundance with non-OTU data (e.g. PICRUSt)
deseq2 picrust written 2.2 years ago by handibles • 10
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DESeq2 - differentially expressed genes for each sample
rnaseq deseq2 written 2.4 years ago by norty89 • 0
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Design formula for use with DESeq2 with SVA
sva deseq2 written 2.5 years ago by brookb • 0
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Select what conditionsto graph in Report tools with Deseq containing multiple conditions
reportingtools deseq2 ggplot2 written 2.6 years ago by abass.conteh • 0
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Inclusion of non-coding portions of transcripts (UTR-regions and introns) within the DEX-seq dataset
dexseq deseq2 differential exon usage written 2.7 years ago by ste.depo • 0
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DEseq normalization Small RNA-seq data using rRNA
smallrna normalization deseq2 ribosomal rna written 2.7 years ago by mosharrofgeb • 0
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Table export from R
deseq2 differential gene expression written 2.7 years ago by jyoti.kapali • 0
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DESeq(): Forking of R Process even though parallel=FALSE
deseq2 biocparallel written 2.7 years ago by frank.staemmler • 0 • updated 2.7 years ago by Michael Love ♦ 24k
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Error to convert a DGEList to DESeqDataSet in DEFormats
edger deseq2 deformats written 2.8 years ago by Akira Imamoto • 0
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Analyzing a continuous phenotype using DESeq2
deseq2 continuous written 2.9 years ago by pjgalli2 • 0
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count table generation using summarizeOverlaps
deseq2 tutorial written 2.9 years ago by Gyan Prakash Mishra • 0
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GOseq tutorial for not supported organisms: am I doing it correctly?
rnaseq biomart goseq deseq2 R written 3.1 years ago by CandiceChuDVM • 30
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