Showing: deseq2reset
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DEseq2 time-series design.
timecourse deseq2 design written 4.8 years ago by shao80 • updated 7 weeks ago by simon baldwin0
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how to handle missing data for SampleTable in DESeq2
deseq2 sample_table missing data written 4.4 years ago by anpham0 • updated 7 months ago by g.wang20
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New function lfcShrink() in DESeq2
deseq2 written 2.3 years ago by Michael Love24k • updated 9 days ago by Micheal Stark0
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DESeq2 1.20.0 lfcshrink function
deseq2 differential expression logfoldchange lfcthreshold lfcshrink written 14 months ago by emi.sch10 • updated 6 weeks ago by yusuf.zhc0
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Need help with DESeq2's contrast feature
deseq2 michael love written 12 months ago by Ashu10 • updated 12 months ago by Michael Love24k
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How to spot genes/transcripts in a MA-plot
deseq2 ma-plot written 12 months ago by vincentpailler0 • updated 12 months ago by Aaron Lun24k
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DESeq2 - is VSD data normalized for covariates in the model
deseq2 written 12 months ago by Akula, Nirmala NIH/NIMH [C]190 • updated 11 months ago by Peter Langfelder2.1k
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DESeqDataSetFromMatrix Unavailable for R Version 3.5.0
deseq2 R new version deseqdatasetfrommatrix written 11 months ago by megannj0 • updated 11 months ago by Michael Love24k
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Problem with writing CollapseReplicates command
deseq2 written 11 months ago by lkianmehr0 • updated 11 months ago by Michael Love24k
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Effectiveness of normalisation if many DE genes using DESeq2
deseq2 written 11 months ago by Alex So0 • updated 11 months ago by Michael Love24k
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Get the countsFromAbundance as limma input
limma deseq2 differential expression tximport written 11 months ago by Darklings0 • updated 11 months ago by Gordon Smyth38k
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Inconsistent results from the lfcThreshold argument?
deseq2 written 11 months ago by yanmin0 • updated 11 months ago by Michael Love24k
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Help with multi-factor Deseq analysis
rnaseq deseq deseq2 written 11 months ago by MAPK0 • updated 11 months ago by Michael Love24k
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DESeq2 replicates management
deseq2 R bioconductor written 11 months ago by anaQ0 • updated 11 months ago by Michael Love24k
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DESeq2 - order of covariates in the design
deseq2 written 11 months ago by Akula, Nirmala NIH/NIMH [C]190 • updated 11 months ago by Michael Love24k
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One-sided p-value from DESeq2
deseq2 p-value nbinomwaldtest one-sided written 11 months ago by t.kuilman140 • updated 11 months ago by Michael Love24k
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DESeq2 design model that considers 3 factors
deseq2 multiple factor design written 11 months ago by sandra0 • updated 11 months ago by Michael Love24k
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question about DESeq2: getVarianceStabilizedData
deseq2 software error written 11 months ago by miyouduniu0 • updated 11 months ago by Michael Love24k
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