Showing: deseq2 • reset
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DESeq2 for analyzing differential expression based on dispersion across samples within groups, instead of based on expression means.
deseq2 dispersion written 1 hour ago by emilio.marmol • 0
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Deseq2: How to compine reseult of different pairwise comparisons
deseq2 written 1 day ago by tarekzakaria.badr • 0 • updated 3 hours ago by Michael Love ♦ 21k
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different observation of DEG for same group
deseq2 de written 7 hours ago by lkianmehr • 0 • updated 3 hours ago by Michael Love ♦ 21k
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DESeq2 LRT test behaving strangely?
deseq2 written 3 days ago by casikecola • 0
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Different results with DESeq2 and EdgeR
edger deseq2 written 5 hours ago by jivarajivaraj • 0 • updated 5 hours ago by Gordon Smyth ♦ 36k
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DESeq2 Formula Design - biological & technical replicates - 3 groups
deseq2 written 3 days ago by rm284 • 0 • updated 3 days ago by Michael Love ♦ 21k
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Can I use DESeq2 for special assays
deseq2 targeted sequencing written 3 days ago by jivarajivaraj • 0 • updated 3 days ago by Michael Love ♦ 21k
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DeSeq2 Design for multiple cell lines, medias, vectors
deseq2 written 3 days ago by jbard • 0 • updated 3 days ago by Michael Love ♦ 21k
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Deseq2 Multiple condition issue
deseq2 written 3 days ago by Jose Meseguer • 0 • updated 3 days ago by Michael Love ♦ 21k
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Request to create an organism package
annotation deseq2 written 3 days ago by estevemp • 0 • updated 3 days ago by James W. MacDonald ♦ 49k
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U-shape of p-value histograms is removed by filtering for genes that have >5 counts in >10% of samples before applying DESeq2 analysis
deseq2 p-value distribution u-shaped pre-filter low counts written 5 days ago by stu111538 • 0
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Using varianceStabilizingTransformation (VST) with no replications?
deseq2 written 4 days ago by nmgduan • 10 • updated 4 days ago by Michael Love ♦ 21k
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DESeq2 - lfcShrink with list contrast on grouped variable
deseq2 written 5 days ago by gcagle1 • 0 • updated 5 days ago by Michael Love ♦ 21k
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What can be done to separate the healthy and patient samples in PCA plot and Distance matrix
visualization deseq2 pcaplot written 6 days ago by Mithil Gaikwad • 0 • updated 5 days ago by Michael Love ♦ 21k
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DeSeq2 Ribosome Profiling: multiple factor design
deseq2 design timeseries written 6 days ago by indrik.wijaya • 0 • updated 5 days ago by Michael Love ♦ 21k
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Handling multiple knockout experiments with DESeq2
deseq2 written 6 days ago by cmfield • 0 • updated 6 days ago by Michael Love ♦ 21k
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How to plot the batch corrected values in DESeq2
normalization deseq2 written 8 days ago by dhwani.dholakia • 0 • updated 8 days ago by Michael Love ♦ 21k
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Error : Salmon tximport to DESeq2
deseq2 tximport written 8 days ago by saddamhusain77 • 0 • updated 8 days ago by Michael Love ♦ 21k
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DESeq2 standard error estimate (lfcSE)
deseq2 written 9 days ago by shintzen • 0 • updated 9 days ago by Michael Love ♦ 21k
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DESeq2: thousands of NA for pvalues?
deseq2 rna-seq degs cooks cutoff written 9 days ago by aishu.jp • 10 • updated 9 days ago by Michael Love ♦ 21k
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tximport error with kallisto .h5 files
deseq2 tximport kallisto written 9 days ago by steve.standage • 0 • updated 9 days ago by Michael Love ♦ 21k
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Using Salmon and DESeq2 to compare metagenomic content between samples
deseq2 salmon written 10 days ago by kballa • 0 • updated 10 days ago by Michael Love ♦ 21k
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DESeq2 Formula Design with two variables and individual normalization
deseq2 written 11 days ago by polyptwo • 0 • updated 10 days ago by Michael Love ♦ 21k
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DESeq2 only runs interaction factor x continuous variable with old not new version
deseq2 written 2.9 years ago by hmgeiger • 10 • updated 11 days ago by Bioconductor Community ♦♦ 0
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The number of the counts columns uploaded to the Deseq2 affected the number of reported DEG
deseq2 written 11 days ago by naktang1 • 0
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