Showing: deseq2reset
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[DESEQ2] How to access the normalized data of a DESeqDataSet
deseq2 written 4.2 years ago by john60 • updated 4.2 years ago by Steve Lianoglou12k
8
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8 follow
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DESeq2 output explanation
deseq deseq2 written 4.5 years ago by francesca.defilippis60 • updated 4.5 years ago by Michael Love23k
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8 follow
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deseq2 filter the low counts
deseq2 lowcount written 4.2 years ago by aristotele_m30 • updated 2.6 years ago by pkachroo10
16
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11 follow
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Batch correction in DESeq2
rnaseq deseq2 combat removebatcheffect() batch effect written 3.4 years ago by AB40 • updated 3.0 years ago by adam0
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FDR and padj in deseq and edger
edger deseq2 written 3.5 years ago by tonja.r40 • updated 3.5 years ago by Gordon Smyth37k
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DESeq2 baseMean counts
deseq2 written 3.5 years ago by zpingfeng0 • updated 3.5 years ago by Michael Love23k
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Normalization in DESeq2
deseq deseq2 written 4.4 years ago by solgakar@bi.technion.ac.il60 • updated 4.4 years ago by Michael Love23k
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Group comparison in DESeq2
deseq2 results written 3.7 years ago by jjinhyoungkim20 • updated 3.7 years ago by Michael Love23k
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9
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DESEq2 comparison with mulitple cell types under 2 conditions
deseq2 multiple factor design written 4.0 years ago by kmu00440 • updated 4.0 years ago by Michael Love23k
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Report and compare log2FC vs FC
deseq2 logfc written 4.1 years ago by Catalina Aguilar Hurtado50 • updated 4.1 years ago by smoorthie10
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DEseq2 time-series design.
timecourse deseq2 design written 4.5 years ago by shao80 • updated 4.0 years ago by lmolla10
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plotPCA - how to add labels to a PCA plot
deseq2 plotpca labels written 2.4 years ago by al-ash20 • updated 2.4 years ago by Federico Marini120
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Integrating DESeq2 and TopGO for Enrichment
rnaseq go deseq2 R written 4.3 years ago by nw32810 • updated 4.3 years ago by Bernd Klaus550
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logfoldStandard Error and wald-statistics in DESeq2 results
deseq2 wald written 4.2 years ago by deena10 • updated 4.2 years ago by Michael Love23k
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18 follow
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New function lfcShrink() in DESeq2
deseq2 written 2.0 years ago by Michael Love23k
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With DESeq2 "Not full rank" Error with design ~ line + time + condition
deseq deseq2 written 4.3 years ago by c.lieftink@nki.nl20 • updated 4.3 years ago by Michael Love23k
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DESeq2 and shrinkage of log2 fold changes
deseq2 written 3.3 years ago by riccardo70 • updated 3.3 years ago by Michael Love23k
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DESeq2 FPKM normalization
normalization deseq2 written 3.3 years ago by riccardo70
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DESeq2 for ChIP-seq differential peaks
chipseq deseq deseq2 written 3.7 years ago by tangming2005130 • updated 22 months ago by k.vitting.seerup90
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Inputting counts of zero into DESeq2
deseq2 written 4.5 years ago by jport10 • updated 3.9 years ago by piensaglobalmente10
10
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3
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6 follow
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DESeq2: add annotations (from data frame) to DESeqDataSet
annotation deseq2 granges written 4.6 years ago by Darya Vanichkina110 • updated 3.3 years ago by bioprog0
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DESeq2: Paired Test
deseq deseq2 written 5.1 years ago by Pankaj Agarwal100
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Deseq2: RNA-seq and Negative binomial distribution
rnaseq deseq2 written 3.5 years ago by tony_cybercloud0 • updated 3.5 years ago by Michael Love23k
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