Showing: deseq2reset
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Dispersion fit and p-value distributions
rnaseq deseq2 fdrtool written 8 months ago by C T90 • updated 7 months ago by Ryan C. Thompson7.3k
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3
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Dealing with genes that have Padj=NA
deseq2 written 3.5 years ago by raya.fai20 • updated 10 months ago by Fuqi Xu10
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Does IHW use the supplied alpha for the correction calculations?
deseq2 ihw written 4 months ago by k.vitting.seerup90 • updated 4 months ago by Nikos Ignatiadis160
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DESeq2 w. pathway/network info as a prior knowledge
deseq2 pathway ihw written 4 months ago by guidobarzaghi20 • updated 3 months ago by Michael Love23k
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1
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Compare effect size of gene (lfcShrink or not)
rnaseq deseq2 written 12 months ago by Yuya Liang10 • updated 12 months ago by Michael Love23k
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DESeq2 1.20.0 lfcshrink function
deseq2 differential expression logfoldchange lfcthreshold lfcshrink written 11 months ago by emi.sch10 • updated 11 months ago by Michael Love23k
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123
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DESeq2 Ignore Some Significant Differential Genes due to Extreme Count Outlier
deseq2 written 11 months ago by ijayden.lung10 • updated 11 months ago by Michael Love23k
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Comparisons of comparisons in DESeq2
deseq2 written 11 months ago by Iora10 • updated 11 months ago by Michael Love23k
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accounting for technical variation in DESEQ2
normalization deseq2 written 10 months ago by marco.trizzino8310 • updated 10 months ago by Peter Langfelder2.1k
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DESeq2 error: "vector: cannot make a vector of mode 'S4'"
deseq2 written 10 months ago by ben.langmead20 • updated 10 months ago by Michael Love23k
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DESeq2 for large de novo transcripts assembly
deseq2 written 8 months ago by Emiliano Canton10 • updated 8 months ago by Michael Love23k
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DESEQ2 Finding Unchanged Genes
deseq2 differential gene expression written 8 months ago by tirza.doniger20 • updated 8 months ago by Michael Love23k
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How does my DESeq2 code handle more than two conditions?
deseq2 written 7 months ago by a.rex0 • updated 7 months ago by Michael Love23k
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Why does DEseq2 take a long time to run on large dataset ?
deseq2 large dataset written 7 months ago by mathias.saver10 • updated 7 months ago by Michael Love23k
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109
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Differential expression where only certain samples are paired
deseq2 written 7 months ago by hmgeiger10 • updated 7 months ago by Michael Love23k
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alpha in lfcshrink?
deseq2 written 6 months ago by andrebolerbarros10 • updated 6 months ago by Michael Love23k
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1
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DEseq2 with different fastq read numbers after salmon
deseq2 salmon salmon rna seq written 6 months ago by danalvoronov10 • updated 6 months ago by Michael Love23k
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WGCNA following salmon/DESeq2
deseq2 wgcna salmon written 6 months ago by maya.kappil10 • updated 6 months ago by Peter Langfelder2.1k
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lfcShrink, interactions, and ashr
deseq2 contrast lfcshrink written 6 months ago by jurbach10 • updated 6 months ago by Michael Love23k
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