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0
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0
answers
44
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0
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Ballgown normalisation... why are still using FPKM?
rnaseq normalization differential expression differential gene expression written 10 days ago by manuelmendoza • 0
1
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88
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differential expression analysis with big dataset and >500 surrogate variables
sva deseq2 differential expression lrt written 4 weeks ago by aec • 40
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1
answer
101
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1
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Interpretation of p-value plot
limma differential expression p values written 6 weeks ago by karlien.springael • 0 • updated 6 weeks ago by Gordon Smyth ♦ 33k
5
votes
2
answers
139
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2
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Finding genes respond differently to treatment between many genotype comparison
edger differential expression nested design written 7 weeks ago by chiayi • 0 • updated 7 weeks ago by Gordon Smyth ♦ 33k
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1
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98
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1
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interaction model deseq2 specific DE genes
deseq2 differential expression interaction model written 8 weeks ago by aec • 40 • updated 8 weeks ago by Michael Love ♦ 18k
6
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1
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145
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1
answer
Fitting Gamma GLMs for examining differential expression
edger deseq2 differential expression written 12 weeks ago by jspmccain • 10 • updated 12 weeks ago by Ryan C. Thompson ♦ 6.8k
3
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1
answer
505
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1
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Justification for collapsing technical replicates in DESeq2
rnaseq deseq2 differential expression replicate written 23 months ago by kieranrcampbell • 30 • updated 3 months ago by jovel_juan • 10
7
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1
answer
228
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1
answer
Analysis of pathways using edgeR
rnaseq edger kegg differential expression written 3 months ago by fawazfebin • 30 • updated 3 months ago by Gordon Smyth ♦ 33k
1
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1
answer
222
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1
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How to perform time-course differential expression with "erroneous" baseline in edgeR?
timecourse edger differential expression written 4 months ago by Enzo Castillejos • 0 • updated 4 months ago by Gordon Smyth ♦ 33k
1
vote
1
answer
350
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1
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Using DESeq2 to analyse TCGA data
deseq2 differential expression tcga gene expression tcgabiolinks written 4 months ago by victor.ramos.usp • 0 • updated 4 months ago by Michael Love ♦ 18k
1
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2
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158
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2
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Differential expressiong with two groups in BASiCS
bayesian differential expression single-cell basics written 4 months ago by muad.abdelhay • 10 • updated 4 months ago by CataVallejos • 10
0
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1
answer
139
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1
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Run tweeDEseq on Flux-capacitor RPKM values
tweedeseq differential expression written 4 months ago by vrehaman • 0 • updated 4 months ago by Robert Castelo • 2.2k
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1
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154
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1
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DESeq2, no significantly DE genes
deseq2 differential expression adjusted pvalue written 4 months ago by A • 0 • updated 4 months ago by Michael Love ♦ 18k
2
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1
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186
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1
answer
Protein differential Expression analysis
proteomics differential expression written 5 months ago by cardin.julie • 0 • updated 5 months ago by Laurent Gatto ♦ 980
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0
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100
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0
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TCGAvisualize_EAbarplot error in TCGAbiolinks
differential expression tcgabiolinks tcgavisualize_eabarplot written 5 months ago by fawazfebin • 30
1
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3
answers
319
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3
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DESeq2 and edgeR getting very different results
edger deseq2 differential expression written 6 months ago by audrey.o.renson • 0 • updated 6 months ago by pablo_garcia05 • 20
2
votes
1
answer
173
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1
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How to add more columns to ReportingTools output?
microarray annotation reportingtools differential expression differential analysis written 6 months ago by jirkanov • 0 • updated 6 months ago by James W. MacDonald ♦ 46k
3
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1
answer
201
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1
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Applying replaceOutliers rather than throwing out genes when model includes continuous variable
rnaseq deseq2 differential expression differential gene expression written 6 months ago by mark.ebbert • 0 • updated 6 months ago by Michael Love ♦ 18k
1
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2
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318
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2
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Two-way anova 2x2 design with limma
microarray limma differential expression written 7 months ago by damoros • 0
2
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1
answer
229
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1
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Deseq2 result for a variable
deseq2 differential expression results written 8 months ago by yoursbassanio • 0 • updated 8 months ago by Michael Love ♦ 18k
1
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1
answer
208
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1
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DESeq: large difference in number of replicates per condition
rnaseq deseq2 differential expression written 8 months ago by krc3004 • 10 • updated 8 months ago by Michael Love ♦ 18k
0
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1
answer
326
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1
answer
What causes this DESeq2 error at "fitting model and testing"?
deseq2 error differential expression written 8 months ago by ap3637 • 0
5
votes
1
answer
261
views
1
answer
Differential expression analysis desgin
limma edger deseq2 differential expression interactions written 8 months ago by kendralec • 10 • updated 8 months ago by Gordon Smyth ♦ 33k
0
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0
answers
160
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0
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How to specify covariates in maSigPro analysis (like limma)
limma masigpro differential expression covariates time-course written 8 months ago by veersingh.marwah • 0
3
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2
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254
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2
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About the results and contrast (DESeq2)
deseq2 differential expression rna-seq written 9 months ago by David Requena • 20
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