Search
0
votes
1
answer
92
views
1
answer
Read normalization in a complex sample
normalization deseq2 differential expression written 8 days ago by RMRG • 0 • updated 7 days ago by Michael Love ♦ 13k
0
votes
1
answer
167
views
1
answer
Derinder options (species, annotations style)
rnaseq derfinder differential expression written 16 days ago by jack_ohara_097 • 0 • updated 16 days ago by Leonardo Collado Torres • 490
0
votes
1
answer
102
views
1
answer
How to adjust for different cell type mixtures in differential expression analysis?
rnaseq differential expression adjustment cell types mixtures written 5 weeks ago by aec • 30 • updated 5 weeks ago by Ryan C. Thompson ♦ 5.9k
1
vote
1
answer
84
views
1
answer
accounting for phylogenetic non-independence in differential expression analysis
edger differential expression phylogenetic comparative methods written 5 weeks ago by noah.reid • 0 • updated 5 weeks ago by Aaron Lun • 15k
1
vote
1
answer
126
views
1
answer
Differential expression after different normalization methods
deseq2 differential expression written 12 weeks ago by Bio_Ram • 0 • updated 12 weeks ago by Michael Love ♦ 13k
0
votes
1
answer
279
views
1
answer
Multiple comparisons for DE analysis with DESeq2
deseq2 differential expression experimental design mirna-seq written 3 months ago by francesco.gandolfi • 0 • updated 3 months ago by Gavin Kelly • 250
1
vote
2
answers
1.2k
views
2
answers
Ballgown up and down regulated genes
differential expression ballgown written 19 months ago by psbpedrobarbosa • 0 • updated 3 months ago by kapeelc • 0
2
votes
1
answer
258
views
1
answer
Pairwise differential expression analysis with batch effect using edgeR and SVA
edger sva differential expression rna-seq written 4 months ago by mpj5142 • 0 • updated 4 months ago by Aaron Lun • 15k
2
votes
0
answers
115
views
0
answers
differential expression with heterogenous disease
differential expression heterogenous individual effects written 4 months ago by aec • 30
0
votes
1
answer
178
views
1
answer
How to deal with up to 75% of DE genes in RNA-seq (TMM, edgeR) ?
rnaseq normalization edger differential expression tmm written 4 months ago by aec • 30
0
votes
1
answer
205
views
1
answer
How to proceed with different degradation levels of RNA-seq samples?
brain differential expression rna-seq degradation variability written 4 months ago by aec • 30 • updated 4 months ago by Aaron Lun • 15k
1
vote
1
answer
164
views
1
answer
How different ploidy affect differential expression analysis with RNA-seq
normalization differential expression rna-seq ploidy assumption written 4 months ago by aec • 30 • updated 4 months ago by Aaron Lun • 15k
0
votes
0
answers
205
views
0
answers
Please help with ballgown problem
differential expression ballgown written 5 months ago by Sara • 0
2
votes
2
answers
213
views
2
answers
Comparing across sets of regulated genes -- Strategies?
limma differential expression written 6 months ago by Calin-Jageman, Robert • 30 • updated 6 months ago by Lluís R • 270
6
votes
1
answer
299
views
1
answer
Alternate expression of splice isoforms on Affy Clariom D assay
affy differential expression alternate expression written 6 months ago by mforde84 • 10 • updated 6 months ago by James W. MacDonald ♦ 44k
2
votes
3
answers
311
views
3
answers
Limma: Defining the design matrix of a linear mixed model
rnaseq limma differential expression written 6 months ago by j.baldauf • 0
2
votes
1
answer
224
views
1
answer
Analysis of RNA-seq time series with edgeR
timecourse edger differential expression time course rna-seq written 9 months ago by Francesca • 0 • updated 9 months ago by Aaron Lun • 15k
1
vote
1
answer
198
views
1
answer
2-Factor Experiment in edgeR, Effect of no reps in one set and two reps in others
rnaseq edger differential expression dispersion written 9 months ago by nancyjwahl7 • 0 • updated 9 months ago by Ryan C. Thompson ♦ 5.9k
1
vote
1
answer
235
views
1
answer
differential expression analysis in edgeR when you have 2 experiments and batch effect in 1 of the 2 experiments.
edger differential expression batch effect written 10 months ago by sezimmer • 0
0
votes
1
answer
218
views
1
answer
expression profiles between DESeq2 and Mfuzz
timecourse mfuzz deseq2 differential expression written 10 months ago by Assa Yeroslaviz • 1.3k • updated 10 months ago by Michael Love ♦ 13k
2
votes
1
answer
255
views
1
answer
Targeted RNASeq/CaptureSeq DE Analysis
edger deseq2 rna differential expression written 11 months ago by tyssowski • 0 • updated 11 months ago by Aaron Lun • 15k
4
votes
2
answers
283
views
2
answers
Find if a covariate has effect on gene expression level using edgeR and DESeq2
edger deseq2 differential expression model matrix written 11 months ago by ta65 • 0
5
votes
1
answer
386
views
1
answer
Error when calculating DE using the classical approach in edgeR
edger differential expression rna-seq written 11 months ago by lynski008 • 0 • updated 11 months ago by Gordon Smyth ♦ 31k
0
votes
0
answers
258
views
0
answers
SCDE for differential expression
differential expression single cell scde written 12 months ago by mnaymik • 10
2
votes
2
answers
365
views
2
answers
Analysis of shRNA screen data
edger deseq2 differential expression shrna normalized counts written 12 months ago by Jane Merlevede • 90
<prev • 65 results • page 1 of 3 • next >
Recent...
Replies
Votes
Awards • All »
Locations • All »
  • Cambridge, United Kingdom, 15 minutes ago
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 229 users visited in the last hour