12
votes
1
answer
1.6k
views
7 follow
1
answer
edgeR glmLRT with test="F"?
edger differential expression dge written 3.5 years ago by Ryan C. Thompson7.0k • updated 3.5 years ago by Aaron Lun21k
5
votes
1
answer
4.7k
views
5 follow
1
answer
Ballgown vs (voom,edgeR,DESeq,limma)
rnaseq limma differential expression voom written 3.9 years ago by Fran├žois Lefebvre50 • updated 3.9 years ago by Alyssa Frazee200
15
votes
1
answer
395
views
5 follow
1
answer
3
votes
2
answers
3.1k
views
2
answers
Ballgown up and down regulated genes
differential expression ballgown written 2.9 years ago by psbpedrobarbosa10 • updated 19 months ago by kapeelc0
3
votes
1
answer
831
views
1
answer
6
votes
1
answer
898
views
1
answer
3
votes
1
answer
279
views
1
answer
1
vote
3
answers
900
views
3
answers
DESeq2 and edgeR getting very different results
edger deseq2 differential expression written 12 months ago by audrey.o.renson0 • updated 12 months ago by pablo_garcia0520
1
vote
1
answer
416
views
1
answer
3
votes
2
answers
369
views
2
answers
2
votes
1
answer
329
views
1
answer
Protein differential Expression analysis
proteomics differential expression written 11 months ago by cardin.julie0 • updated 11 months ago by Laurent Gatto1.0k
7
votes
1
answer
387
views
1
answer
Analysis of pathways using edgeR
rnaseq edger kegg differential expression written 9 months ago by fawazfebin30 • updated 9 months ago by Gordon Smyth35k
6
votes
1
answer
432
views
1
answer
1
vote
1
answer
1.3k
views
1
answer
Deconvolution RNA-Seq data
differential expression rna-seq written 3.8 years ago by carleshf10 • updated 3.8 years ago by James W. MacDonald48k
0
votes
0
answers
579
views
0
answers
6
votes
3
answers
1.4k
views
3
answers
0
votes
1
answer
419
views
1
answer
Find differentially expressed values
edger differential expression differential gene expression written 3.6 years ago by Safana0 • updated 3.6 years ago by Gordon Smyth35k
4
votes
2
answers
580
views
2
answers
Differential expression on codelink data
codelink R differential expression written 3.6 years ago by Agaz Hussain Wani260 • updated 3.6 years ago by Diego Diez730
1
vote
1
answer
646
views
1
answer
1
vote
1
answer
722
views
1
answer
Passing contrasts as a vector gives an error
limma R differential expression written 3.5 years ago by Agaz Hussain Wani260 • updated 3.5 years ago by Gordon Smyth35k
4
votes
1
answer
782
views
1
answer
12
votes
1
answer
16k
views
1
answer
RPKM, CPM and TMM
rnaseq edger differential expression written 3.4 years ago by Pauly Lin80 • updated 3.4 years ago by Aaron Lun21k
2
votes
1
answer
3.2k
views
1
answer
3
votes
3
answers
1.0k
views
3
answers
2
votes
1
answer
1.1k
views
1
answer
order of covariates for GLM with edgeR
edger differential expression glm covariate batch effect written 3.0 years ago by aec40 • updated 3.0 years ago by Gordon Smyth35k
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