12
votes
1
answer
1.1k
views
7 follow
1
answer
edgeR glmLRT with test="F"?
edger differential expression dge written 2.7 years ago by Ryan C. Thompson6.3k • updated 2.7 years ago by Aaron Lun18k
6
votes
1
answer
568
views
1
answer
3
votes
1
answer
157
views
1
answer
1
vote
3
answers
207
views
3
answers
3
votes
1
answer
3.6k
views
1
answer
Ballgown vs (voom,edgeR,DESeq,limma)
rnaseq limma differential expression voom written 3.1 years ago by François Lefebvre40 • updated 3.1 years ago by Alyssa Frazee150
3
votes
2
answers
193
views
2
answers
2
votes
1
answer
122
views
1
answer
Protein differential Expression analysis
proteomics differential expression written 7 weeks ago by cardin.julie0 • updated 6 weeks ago by Laurent Gatto900
1
vote
1
answer
903
views
1
answer
Deconvolution RNA-Seq data
differential expression rna-seq written 3.0 years ago by carleshf10 • updated 3.0 years ago by James W. MacDonald45k
0
votes
0
answers
432
views
0
answers
6
votes
3
answers
1.1k
views
3
answers
0
votes
1
answer
357
views
1
answer
Find differentially expressed values
edger differential expression differential gene expression written 2.8 years ago by Safana0 • updated 2.8 years ago by Gordon Smyth32k
4
votes
2
answers
480
views
2
answers
Differential expression on codelink data
codelink R differential expression written 2.8 years ago by Agaz Hussain Wani250 • updated 2.8 years ago by Diego Diez720
1
vote
1
answer
513
views
1
answer
1
vote
1
answer
579
views
1
answer
Passing contrasts as a vector gives an error
limma R differential expression written 2.7 years ago by Agaz Hussain Wani250 • updated 2.7 years ago by Gordon Smyth32k
4
votes
1
answer
537
views
1
answer
10
votes
1
answer
11k
views
1
answer
RPKM, CPM and TMM
rnaseq edger differential expression written 2.7 years ago by Pauly Lin80 • updated 2.7 years ago by Aaron Lun18k
2
votes
1
answer
2.4k
views
1
answer
3
votes
3
answers
668
views
3
answers
2
votes
1
answer
810
views
1
answer
order of covariates for GLM with edgeR
edger differential expression glm covariate batch effect written 2.2 years ago by aec30 • updated 2.2 years ago by Gordon Smyth32k
1
vote
2
answers
1.9k
views
2
answers
Ballgown up and down regulated genes
differential expression ballgown written 2.1 years ago by psbpedrobarbosa0 • updated 10 months ago by kapeelc0
3
votes
1
answer
373
views
1
answer
2
votes
2
answers
531
views
2
answers
4
votes
2
answers
395
views
2
answers
2
votes
2
answers
310
views
2
answers
Comparing across sets of regulated genes -- Strategies?
limma differential expression written 12 months ago by Calin-Jageman, Robert30 • updated 12 months ago by Lluís R310
1
vote
1
answer
260
views
1
answer
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