12
votes
1
answer
1.5k
views
7 follow
1
answer
edgeR glmLRT with test="F"?
edger differential expression dge written 3.3 years ago by Ryan C. Thompson6.8k • updated 3.3 years ago by Aaron Lun21k
5
votes
1
answer
4.5k
views
5 follow
1
answer
Ballgown vs (voom,edgeR,DESeq,limma)
rnaseq limma differential expression voom written 3.7 years ago by Fran├žois Lefebvre50 • updated 3.7 years ago by Alyssa Frazee200
14
votes
1
answer
236
views
5 follow
1
answer
3
votes
2
answers
2.8k
views
2
answers
Ballgown up and down regulated genes
differential expression ballgown written 2.7 years ago by psbpedrobarbosa10 • updated 17 months ago by kapeelc0
3
votes
1
answer
645
views
1
answer
6
votes
1
answer
817
views
1
answer
3
votes
1
answer
244
views
1
answer
1
vote
3
answers
490
views
3
answers
1
vote
1
answer
348
views
1
answer
3
votes
2
answers
306
views
2
answers
2
votes
1
answer
239
views
1
answer
Protein differential Expression analysis
proteomics differential expression written 8 months ago by cardin.julie0 • updated 8 months ago by Laurent Gatto1.0k
7
votes
1
answer
289
views
1
answer
Analysis of pathways using edgeR
rnaseq edger kegg differential expression written 6 months ago by fawazfebin30 • updated 6 months ago by Gordon Smyth35k
6
votes
1
answer
198
views
1
answer
1
vote
1
answer
1.2k
views
1
answer
Deconvolution RNA-Seq data
differential expression rna-seq written 3.6 years ago by carleshf10 • updated 3.6 years ago by James W. MacDonald47k
0
votes
0
answers
550
views
0
answers
6
votes
3
answers
1.3k
views
3
answers
0
votes
1
answer
399
views
1
answer
Find differentially expressed values
edger differential expression differential gene expression written 3.4 years ago by Safana0 • updated 3.4 years ago by Gordon Smyth35k
4
votes
2
answers
534
views
2
answers
Differential expression on codelink data
codelink R differential expression written 3.3 years ago by Agaz Hussain Wani260 • updated 3.3 years ago by Diego Diez730
1
vote
1
answer
605
views
1
answer
1
vote
1
answer
668
views
1
answer
Passing contrasts as a vector gives an error
limma R differential expression written 3.3 years ago by Agaz Hussain Wani260 • updated 3.3 years ago by Gordon Smyth35k
4
votes
1
answer
696
views
1
answer
11
votes
1
answer
14k
views
1
answer
RPKM, CPM and TMM
rnaseq edger differential expression written 3.2 years ago by Pauly Lin80 • updated 3.2 years ago by Aaron Lun21k
2
votes
1
answer
2.9k
views
1
answer
3
votes
3
answers
918
views
3
answers
2
votes
1
answer
980
views
1
answer
order of covariates for GLM with edgeR
edger differential expression glm covariate batch effect written 2.7 years ago by aec40 • updated 2.7 years ago by Gordon Smyth35k
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