9
votes
1
answer
9.9k
views
1
answer
RPKM, CPM and TMM
rnaseq edger differential expression written 2.4 years ago by Pauly Lin60 • updated 2.4 years ago by Aaron Lun17k
3
votes
1
answer
3.3k
views
1
answer
Ballgown vs (voom,edgeR,DESeq,limma)
rnaseq limma differential expression voom written 2.8 years ago by François Lefebvre40 • updated 2.8 years ago by Alyssa Frazee110
2
votes
1
answer
2.1k
views
1
answer
4
votes
1
answer
1.9k
views
1
answer
edgeR normalization method
normalization edger differential expression written 20 months ago by Sara0 • updated 20 months ago by Aaron Lun17k
3
votes
1
answer
1.9k
views
1
answer
1
vote
2
answers
1.6k
views
2
answers
Ballgown up and down regulated genes
differential expression ballgown written 22 months ago by psbpedrobarbosa0 • updated 6 months ago by kapeelc0
1
vote
3
answers
1.1k
views
3
answers
0
votes
0
answers
1.1k
views
0
answers
6
votes
3
answers
984
views
3
answers
1
vote
1
answer
951
views
1
answer
2
votes
1
answer
947
views
1
answer
DESeq2/SAMSeq - analysing subset of genes from RNASeq dataset
deseq2 differential expression samseq written 20 months ago by aylj0 • updated 20 months ago by Michael Love14k
11
votes
1
answer
938
views
6 follow
1
answer
edgeR glmLRT with test="F"?
edger differential expression dge written 2.4 years ago by Ryan C. Thompson6.1k • updated 2.4 years ago by Aaron Lun17k
4
votes
1
answer
866
views
1
answer
Two-class unpaired test using LIMMA
limma differential expression sam written 3.0 years ago by Bade310 • updated 3.0 years ago by James W. MacDonald45k
1
vote
1
answer
797
views
1
answer
Deconvolution RNA-Seq data
differential expression rna-seq written 2.7 years ago by carleshf10 • updated 2.7 years ago by James W. MacDonald45k
3
votes
1
answer
747
views
1
answer
2
votes
1
answer
699
views
1
answer
order of covariates for GLM with edgeR
edger differential expression glm covariate batch effect written 23 months ago by aec30 • updated 23 months ago by Gordon Smyth32k
2
votes
1
answer
686
views
1
answer
3
votes
2
answers
591
views
2
answers
3
votes
3
answers
555
views
3
answers
0
votes
1
answer
553
views
1
answer
0
votes
0
answers
548
views
0
answers
1
vote
1
answer
545
views
1
answer
Passing contrasts as a vector gives an error
limma R differential expression written 2.4 years ago by Agaz Hussain Wani240 • updated 2.4 years ago by Gordon Smyth32k
6
votes
2
answers
494
views
2
answers
Can i set a path for readCodlinkSet()
codelink R differential expression written 2.4 years ago by Agaz Hussain Wani240 • updated 2.4 years ago by Diego Diez700
0
votes
1
answer
489
views
1
answer
1
vote
1
answer
474
views
1
answer
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