11
votes
1
answer
13k
views
1
answer
RPKM, CPM and TMM
rnaseq edger differential expression written 3.0 years ago by Pauly Lin80 • updated 3.0 years ago by Aaron Lun20k
5
votes
1
answer
4.3k
views
5 follow
1
answer
Ballgown vs (voom,edgeR,DESeq,limma)
rnaseq limma differential expression voom written 3.5 years ago by François Lefebvre50 • updated 3.5 years ago by Alyssa Frazee190
4
votes
1
answer
3.2k
views
1
answer
edgeR normalization method
normalization edger differential expression written 2.4 years ago by Sara0 • updated 2.4 years ago by Aaron Lun20k
2
votes
1
answer
2.8k
views
1
answer
1
vote
2
answers
2.5k
views
2
answers
Ballgown up and down regulated genes
differential expression ballgown written 2.5 years ago by psbpedrobarbosa0 • updated 14 months ago by kapeelc0
3
votes
1
answer
2.5k
views
1
answer
0
votes
0
answers
1.5k
views
0
answers
3
votes
3
answers
1.5k
views
3
answers
12
votes
1
answer
1.4k
views
7 follow
1
answer
edgeR glmLRT with test="F"?
edger differential expression dge written 3.1 years ago by Ryan C. Thompson6.8k • updated 3.1 years ago by Aaron Lun20k
0
votes
1
answer
1.3k
views
1
answer
2
votes
1
answer
1.3k
views
1
answer
DESeq2/SAMSeq - analysing subset of genes from RNASeq dataset
deseq2 differential expression samseq written 2.4 years ago by aylj0 • updated 2.4 years ago by Michael Love18k
6
votes
3
answers
1.2k
views
3
answers
1
vote
1
answer
1.2k
views
1
answer
1
vote
1
answer
1.1k
views
1
answer
Deconvolution RNA-Seq data
differential expression rna-seq written 3.4 years ago by carleshf10 • updated 3.4 years ago by James W. MacDonald46k
4
votes
1
answer
1.0k
views
1
answer
Two-class unpaired test using LIMMA
limma differential expression sam written 3.6 years ago by Bade310 • updated 3.6 years ago by James W. MacDonald46k
3
votes
1
answer
949
views
1
answer
2
votes
1
answer
939
views
1
answer
order of covariates for GLM with edgeR
edger differential expression glm covariate batch effect written 2.6 years ago by aec40 • updated 2.5 years ago by Gordon Smyth34k
3
votes
2
answers
875
views
2
answers
3
votes
3
answers
840
views
3
answers
2
votes
1
answer
803
views
1
answer
2
votes
1
answer
783
views
1
answer
6
votes
1
answer
750
views
1
answer
0
votes
0
answers
747
views
0
answers
2
votes
3
answers
706
views
3
answers
2
votes
1
answer
700
views
1
answer
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