11
votes
1
answer
15k
views
1
answer
RPKM, CPM and TMM
rnaseq edger differential expression written 3.3 years ago by Pauly Lin80 • updated 3.3 years ago by Aaron Lun21k
5
votes
1
answer
4.5k
views
5 follow
1
answer
Ballgown vs (voom,edgeR,DESeq,limma)
rnaseq limma differential expression voom written 3.7 years ago by François Lefebvre50 • updated 3.7 years ago by Alyssa Frazee200
4
votes
1
answer
3.5k
views
1
answer
edgeR normalization method
normalization edger differential expression written 2.6 years ago by Sara0 • updated 2.6 years ago by Aaron Lun21k
2
votes
1
answer
3.0k
views
1
answer
3
votes
2
answers
2.9k
views
2
answers
Ballgown up and down regulated genes
differential expression ballgown written 2.7 years ago by psbpedrobarbosa10 • updated 18 months ago by kapeelc0
3
votes
1
answer
2.7k
views
1
answer
3
votes
3
answers
1.7k
views
3
answers
0
votes
1
answer
1.7k
views
1
answer
0
votes
0
answers
1.6k
views
0
answers
12
votes
1
answer
1.5k
views
7 follow
1
answer
edgeR glmLRT with test="F"?
edger differential expression dge written 3.4 years ago by Ryan C. Thompson6.9k • updated 3.4 years ago by Aaron Lun21k
2
votes
1
answer
1.4k
views
1
answer
DESeq2/SAMSeq - analysing subset of genes from RNASeq dataset
deseq2 differential expression samseq written 2.6 years ago by aylj0 • updated 2.6 years ago by Michael Love19k
6
votes
3
answers
1.3k
views
3
answers
1
vote
1
answer
1.3k
views
1
answer
1
vote
1
answer
1.2k
views
1
answer
Deconvolution RNA-Seq data
differential expression rna-seq written 3.6 years ago by carleshf10 • updated 3.6 years ago by James W. MacDonald48k
4
votes
1
answer
1.1k
views
1
answer
Two-class unpaired test using LIMMA
limma differential expression sam written 3.9 years ago by Bade310 • updated 3.9 years ago by James W. MacDonald48k
3
votes
1
answer
1.0k
views
1
answer
2
votes
1
answer
1.0k
views
1
answer
2
votes
1
answer
1.0k
views
1
answer
order of covariates for GLM with edgeR
edger differential expression glm covariate batch effect written 2.8 years ago by aec40 • updated 2.8 years ago by Gordon Smyth35k
3
votes
2
answers
985
views
2
answers
3
votes
3
answers
948
views
3
answers
2
votes
1
answer
908
views
1
answer
2
votes
3
answers
877
views
3
answers
2
votes
1
answer
847
views
1
answer
6
votes
1
answer
841
views
1
answer
0
votes
0
answers
789
views
0
answers
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