9
votes
1
answer
11k
views
1
answer
RPKM, CPM and TMM
rnaseq edger differential expression written 2.5 years ago by Pauly Lin80 • updated 2.5 years ago by Aaron Lun18k
3
votes
1
answer
3.5k
views
1
answer
Ballgown vs (voom,edgeR,DESeq,limma)
rnaseq limma differential expression voom written 3.0 years ago by François Lefebvre40 • updated 3.0 years ago by Alyssa Frazee110
2
votes
1
answer
2.3k
views
1
answer
4
votes
1
answer
2.2k
views
1
answer
edgeR normalization method
normalization edger differential expression written 22 months ago by Sara0 • updated 22 months ago by Aaron Lun18k
3
votes
1
answer
2.0k
views
1
answer
1
vote
2
answers
1.8k
views
2
answers
Ballgown up and down regulated genes
differential expression ballgown written 24 months ago by psbpedrobarbosa0 • updated 8 months ago by kapeelc0
1
vote
3
answers
1.2k
views
3
answers
0
votes
0
answers
1.2k
views
0
answers
6
votes
3
answers
1.0k
views
3
answers
11
votes
1
answer
1.0k
views
6 follow
1
answer
edgeR glmLRT with test="F"?
edger differential expression dge written 2.6 years ago by Ryan C. Thompson6.2k • updated 2.6 years ago by Aaron Lun18k
2
votes
1
answer
1.0k
views
1
answer
DESeq2/SAMSeq - analysing subset of genes from RNASeq dataset
deseq2 differential expression samseq written 22 months ago by aylj0 • updated 22 months ago by Michael Love15k
1
vote
1
answer
1.0k
views
1
answer
4
votes
1
answer
897
views
1
answer
Two-class unpaired test using LIMMA
limma differential expression sam written 3.1 years ago by Bade310 • updated 3.1 years ago by James W. MacDonald45k
1
vote
1
answer
858
views
1
answer
Deconvolution RNA-Seq data
differential expression rna-seq written 2.9 years ago by carleshf10 • updated 2.9 years ago by James W. MacDonald45k
3
votes
1
answer
793
views
1
answer
2
votes
1
answer
758
views
1
answer
order of covariates for GLM with edgeR
edger differential expression glm covariate batch effect written 2.1 years ago by aec30 • updated 2.0 years ago by Gordon Smyth32k
2
votes
1
answer
710
views
1
answer
0
votes
1
answer
710
views
1
answer
3
votes
2
answers
655
views
2
answers
3
votes
3
answers
616
views
3
answers
0
votes
0
answers
585
views
0
answers
1
vote
1
answer
567
views
1
answer
Passing contrasts as a vector gives an error
limma R differential expression written 2.6 years ago by Agaz Hussain Wani250 • updated 2.6 years ago by Gordon Smyth32k
6
votes
1
answer
526
views
1
answer
0
votes
1
answer
516
views
1
answer
6
votes
2
answers
512
views
2
answers
Can i set a path for readCodlinkSet()
codelink R differential expression written 2.6 years ago by Agaz Hussain Wani250 • updated 2.6 years ago by Diego Diez710
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