Showing: differential expressionreset
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RPKM, CPM and TMM
rnaseq edger differential expression written 4.1 years ago by Pauly Lin90 • updated 4.1 years ago by Aaron Lun24k
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Ballgown vs (voom,edgeR,DESeq,limma)
rnaseq limma differential expression voom written 4.6 years ago by François Lefebvre50 • updated 4.6 years ago by Alyssa Frazee210
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edgeR normalization method
normalization edger differential expression written 3.4 years ago by Sara0 • updated 3.4 years ago by Aaron Lun24k
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Ballgown up and down regulated genes
differential expression ballgown written 3.6 years ago by psbpedrobarbosa10 • updated 2.3 years ago by kapeelc0
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DESeq2 and edgeR getting very different results
edger deseq2 differential expression written 20 months ago by audrey.o.renson0 • updated 20 months ago by pablo_garcia0520
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7 follow
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edgeR glmLRT with test="F"?
edger differential expression dge written 4.2 years ago by Ryan C. Thompson7.3k • updated 4.2 years ago by Aaron Lun24k
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DESeq2/SAMSeq - analysing subset of genes from RNASeq dataset
deseq2 differential expression samseq written 3.4 years ago by aylj0 • updated 3.4 years ago by Michael Love24k
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Deconvolution RNA-Seq data
differential expression rna-seq written 4.5 years ago by carleshf10 • updated 4.5 years ago by James W. MacDonald50k
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Two-class unpaired test using LIMMA
limma differential expression sam written 4.7 years ago by Bade310 • updated 4.7 years ago by James W. MacDonald50k
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order of covariates for GLM with edgeR
edger differential expression glm covariate batch effect written 3.7 years ago by aec40 • updated 3.6 years ago by Gordon Smyth38k
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6 follow
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DESeq2 1.20.0 lfcshrink function
deseq2 differential expression logfoldchange lfcthreshold lfcshrink written 14 months ago by emi.sch10 • updated 5 weeks ago by yusuf.zhc0
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