Showing: differential gene expression • reset
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8
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Confounded design, batch effect correction (edgeR)
rnaseq edger differential gene expression batch effect written 13 months ago by Laura • 20 • updated 4 months ago by Victoria • 0
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I am trying to recreate results from an Alzheimer's paper but I can't figure out my linear regression model
microarray limma edger differential gene expression linear regression written 7 months ago by ravelarvargas • 0
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I am having trouble recreating the linear regression results published in an Alzheimer's paper
microarray limma edger differential gene expression linear regression written 7 months ago by ravelarvargas • 0
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How to find Top 10 expressed genes in DESeq2
deseq2 differential gene expression rnaseqgene basemean written 8 months ago by melkile26 • 0 • updated 8 months ago by swbarnes2 • 330
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My linear regression model is giving me too many differentially expressed genes
limma edger differential gene expression rna-seq linear regression written 8 months ago by ravelarvargas • 0 • updated 8 months ago by Aaron Lun • 25k
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Setting gene expression thresholds for trajectory analysis using Monocle
differential gene expression monocle tutorial detectgenes function written 9 months ago by S.Webb6 • 40
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MDS Plot help in edgeR
edger differential gene expression mds mdsplot plotmds written 9 months ago by ilovesuperheroes1993 • 0 • updated 9 months ago by Gordon Smyth ♦ 39k
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how to find expressed genes in RNAseq
rnaseq deseq2 featurecounts differential gene expression rnaseqgene written 10 months ago by melkile26 • 0
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NanoStringDiff analysis with confounding factors
differential gene expression nanostring confounding factors written 10 months ago by Guillaume Robert • 0 • updated 10 months ago by James W. MacDonald ♦ 51k
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Controlling numerical covariates: differential gene expression with limma voom
rnaseq limma R voom differential gene expression written 10 months ago by Onyi Ukay • 0 • updated 10 months ago by mikhael.manurung • 190
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DESeq2 estimateSizeFactors with control genes
deseq2 differential gene expression controls references written 10 months ago by cris.kgs • 0 • updated 10 months ago by mahesh • 0
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DESeq2 - shrunken log fold changes and threshold test
deseq2 differential gene expression lfcthreshold lfcshrink written 11 months ago by corentinrichard374369 • 0 • updated 11 months ago by Michael Love ♦ 25k
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Error while loading the data structrure in the ballgown tool
rnaseq differential gene expression ballgown new tuxedo pipleine written 11 months ago by Mithil Gaikwad • 0
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Using LIMMA for differential gene analysis of microarray data
limma differential gene expression affymetrix microarrays ncbi geo written 11 months ago by Francesca McGrath • 0 • updated 11 months ago by Aaron Lun • 25k
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DESeq2 with several biological replicates
rnaseq deseq2 differential gene expression written 11 months ago by bharata1803 • 40
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Apply different cutoffs with edgeR pipeline and glmTreat for RNA-Seq DEG analysis
edger differential gene expression glmtreat written 12 months ago by svlachavas • 740 • updated 11 months ago by Gordon Smyth ♦ 39k
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260
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Multi-factor with interaction model in EdgeR and DESeq2
rnaseq edger deseq2 differential gene expression written 11 months ago by camilla.alves • 0 • updated 11 months ago by Michael Love ♦ 25k
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Finding DE genes from RNA-seq data
qvalue edger differential gene expression fpkm pvalue written 12 months ago by Harrisonesmith • 0 • updated 12 months ago by Steve Lianoglou ♦ 12k
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Multiple factor design for differential expression with DESeq2
deseq2 differential gene expression multiple factor design written 12 months ago by galozs • 0 • updated 12 months ago by Michael Love ♦ 25k
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DESEQ2 Finding Unchanged Genes
deseq2 differential gene expression written 12 months ago by tirza.doniger • 20 • updated 12 months ago by Michael Love ♦ 25k
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How to set up appropriate analysis using sample type and condition for DESeq2
deseq2 design differential gene expression written 12 months ago by newbio17 • 0 • updated 12 months ago by Michael Love ♦ 25k
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deseq2 analysis multiple factor and 4 different time points
differential gene expression bias edger and deseq2 written 12 months ago by yusuf.zhc • 0 • updated 12 months ago by swbarnes2 • 330
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491
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How to block for a subject in a 2 factor design formula
rnaseq deseq2 differential gene expression written 12 months ago by Onyi Ukay • 0
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307
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EdgeR between unequal group sizes?
rnaseq edger differential gene expression written 12 months ago by rina • 0 • updated 12 months ago by Gordon Smyth ♦ 39k
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295
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EdgeR blocking and "All combinations of multiple factors"
edger differential gene expression written 13 months ago by rfenouil • 0 • updated 13 months ago by James W. MacDonald ♦ 51k
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