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29
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Human genes correlation to Bacterial genes
differential gene expression rna-seq correlation pearsoncorrelation written 3 days ago by saad_k6 • 0
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Pipeline for Lexogen Quantseq 3' UTR Sequencing
differential gene expression rna seq lexogen quantseq written 3 days ago by pbachali • 0
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2
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Separate listing of up-regulated and down-regulated genes in edgeR DGE results.
edger differential gene expression upregulated genes downregulated genes written 10 days ago by fawazfebin • 30 • updated 9 days ago by lisacarlon25 • 0
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Trying to simplify Interaction analysis with edger, and propably failing to do so?
rnaseq edger interactions differential gene expression multiple factor design written 12 days ago by David Rengel • 70
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86
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1
answer
DESeq2 confounding cartridge
rnaseq deseq2 differential gene expression nanostring confounders written 27 days ago by kim.malek88 • 0 • updated 24 days ago by Michael Love ♦ 17k
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Going crazy with normalizing TCGA raw rsem gene count
rnaseq normalization cancer differential gene expression tcga written 3.0 years ago by ezz • 0 • updated 26 days ago by Dimitris Vavoulis • 0
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Job: PhD Studentship - Investigating Regulation of Transcription and Translation in Prostate Cancer
mirna smallrna job differential gene expression riboseq written 4 weeks ago by Andy Lynch • 100
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Upregulation and Downregulation of Gene Ontology terms
microarray go differential gene expression david written 5 weeks ago by seendey16 • 0
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88
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1
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Differential Coexpression Analysis
differential gene expression correlation coexpression differential analysis written 6 weeks ago by hkarakurt • 10 • updated 6 weeks ago by Peter Langfelder • 1.4k
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edgeR multifactorial analysis implementation with RNA-Seq data
edger differential gene expression multiple comparisons multifactorial design written 6 weeks ago by svlachavas • 570 • updated 6 weeks ago by Aaron Lun • 19k
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67
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plotMA is not centered around zero for logFC
microarray differential gene expression written 6 weeks ago by twentestat • 0
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1
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163
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how to control age and gender effect in expression data using DESeq2
rnaseq deseq2 differential gene expression mirna-seq written 6 weeks ago by klalit1803 • 0 • updated 6 weeks ago by jennietodd141 • 0
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86
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Clustering of samples based on specific gene sets
microarray clustering gene set analysis differential gene expression written 6 weeks ago by cherlyn.t • 0
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269
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Comparing between two differential expression analysis - two different fold changes
rnaseq deseq deseq2 differential gene expression statistical test written 9 weeks ago by Marina • 0
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155
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Requesting help with RNA-Seq differential gene analysis
normalization differential gene expression gene regulatory network gene expression clustering written 9 weeks ago by sagnik • 0
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1
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221
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1
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DESeq2 followed by goseq GO-analysis: Extracting DE genes of enriched GO category
rnaseq goseq deseq2 differential gene expression go enrichment written 9 weeks ago by josef.oeckl • 0 • updated 9 weeks ago by Michael Love ♦ 17k
3
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1
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128
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1
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Performing differential gene analysis on RT PCR experimental data
differential gene expression written 11 weeks ago by Nithisha • 10 • updated 10 weeks ago by Gordon Smyth ♦ 33k
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1
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199
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Pairwise Comparison between A Large Number of Groups
deseq2 differential gene expression written 11 weeks ago by john.ouyang • 0 • updated 11 weeks ago by Michael Love ♦ 17k
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1
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96
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1
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DESeq2 design model/contrasts question 3 level condition
deseq2 differential gene expression experimental design model design written 12 weeks ago by M_K • 0 • updated 12 weeks ago by Michael Love ♦ 17k
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360
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Differential expression of RNA seq data at gene level (for Beginner)
deseq2 bioconductor differential gene expression written 3 months ago by islamshaikhul2014 • 0 • updated 3 months ago by arfranco • 120
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247
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Can DESeq2/edgeR perform differential analysis for rRNA?
edger deseq2 differential gene expression rrna written 3 months ago by r.aprianto • 0
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1
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259
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1
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RNA-seq read alignment best practices for low-input samples
alignment limma differential gene expression rsem rnaseq analysis written 4 months ago by goldberg.jm • 0 • updated 4 months ago by Aaron Lun • 19k
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1
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126
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1
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What package should I use to retrieve chromosome location for Affymetrix id of gene symbol id while doing gene expression microarray analysis ?
differential gene expression affymetrix microarrays written 4 months ago by anandprem1792 • 0 • updated 4 months ago by James W. MacDonald ♦ 46k
3
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1
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182
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1
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Applying replaceOutliers rather than throwing out genes when model includes continuous variable
rnaseq deseq2 differential expression differential gene expression written 4 months ago by mark.ebbert • 0 • updated 4 months ago by Michael Love ♦ 17k
2
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1
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256
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1
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Loads, really loads of DEGs after edgeR differential analysis
rnaseq normalization edger differential gene expression written 4 months ago by David Rengel • 70
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