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How to find Top 10 expressed genes in DESeq2
deseq2 differential gene expression rnaseqgene basemean written 16 days ago by melkile26 • 0 • updated 16 days ago by swbarnes2 • 70
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My linear regression model is giving me too many differentially expressed genes
limma edger differential gene expression rna-seq linear regression written 19 days ago by ravelarvargas • 0 • updated 19 days ago by Aaron Lun • 22k
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Setting gene expression thresholds for trajectory analysis using Monocle
differential gene expression monocle tutorial detectgenes function written 26 days ago by S.Webb6 • 40
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MDS Plot help in edgeR
edger differential gene expression mds mdsplot plotmds written 6 weeks ago by ilovesuperheroes1993 • 0 • updated 6 weeks ago by Gordon Smyth ♦ 36k
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how to find expressed genes in RNAseq
rnaseq deseq2 featurecounts differential gene expression rnaseqgene written 9 weeks ago by melkile26 • 0
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NanoStringDiff analysis with confounding factors
differential gene expression nanostring confounding factors written 9 weeks ago by Guillaume Robert • 0 • updated 9 weeks ago by James W. MacDonald ♦ 49k
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Controlling numerical covariates: differential gene expression with limma voom
rnaseq limma R voom differential gene expression written 11 weeks ago by Onyi Ukay • 0 • updated 11 weeks ago by mikhael.manurung • 10
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DESeq2 estimateSizeFactors with control genes
deseq2 differential gene expression controls references written 11 weeks ago by cris.kgs • 0 • updated 11 weeks ago by mahesh • 0
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DESeq2 - shrunken log fold changes and threshold test
deseq2 differential gene expression lfcthreshold lfcshrink written 12 weeks ago by corentinrichard374369 • 0 • updated 12 weeks ago by Michael Love ♦ 22k
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Error while loading the data structrure in the ballgown tool
rnaseq differential gene expression ballgown new tuxedo pipleine written 3 months ago by Mithil Gaikwad • 0
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Using LIMMA for differential gene analysis of microarray data
limma differential gene expression affymetrix microarrays ncbi geo written 3 months ago by Francesca McGrath • 0 • updated 3 months ago by Aaron Lun • 22k
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DESeq2 with several biological replicates
rnaseq deseq2 differential gene expression written 3 months ago by bharata1803 • 40
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Apply different cutoffs with edgeR pipeline and glmTreat for RNA-Seq DEG analysis
edger differential gene expression glmtreat written 3 months ago by svlachavas • 640 • updated 3 months ago by Gordon Smyth ♦ 36k
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Multi-factor with interaction model in EdgeR and DESeq2
rnaseq edger deseq2 differential gene expression written 3 months ago by camilla.alves • 0 • updated 3 months ago by Michael Love ♦ 22k
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Finding DE genes from RNA-seq data
qvalue edger differential gene expression fpkm pvalue written 3 months ago by Harrisonesmith • 0 • updated 3 months ago by Steve Lianoglou ♦ 12k
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Multiple factor design for differential expression with DESeq2
deseq2 differential gene expression multiple factor design written 4 months ago by galozs • 0 • updated 4 months ago by Michael Love ♦ 22k
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DESEQ2 Finding Unchanged Genes
deseq2 differential gene expression written 4 months ago by tirza.doniger • 20 • updated 4 months ago by Michael Love ♦ 22k
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How to set up appropriate analysis using sample type and condition for DESeq2
deseq2 design differential gene expression written 4 months ago by newbio17 • 0 • updated 4 months ago by Michael Love ♦ 22k
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deseq2 analysis multiple factor and 4 different time points
differential gene expression bias edger and deseq2 written 4 months ago by yusuf.zhc • 0 • updated 4 months ago by swbarnes2 • 70
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How to block for a subject in a 2 factor design formula
rnaseq deseq2 differential gene expression written 4 months ago by Onyi Ukay • 0
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162
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EdgeR between unequal group sizes?
rnaseq edger differential gene expression written 4 months ago by rina • 0 • updated 4 months ago by Gordon Smyth ♦ 36k
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EdgeR blocking and "All combinations of multiple factors"
edger differential gene expression written 5 months ago by rfenouil • 0 • updated 5 months ago by James W. MacDonald ♦ 49k
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Confounded design, batch effect correction (edgeR)
rnaseq edger differential gene expression batch effect written 5 months ago by Laura • 20 • updated 5 months ago by Aaron Lun • 22k
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182
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EdgeR analysis batch effect
edger differential gene expression written 5 months ago by rfenouil • 0 • updated 5 months ago by Aaron Lun • 22k
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Combining biological replicates from raw counts for use in differential gene expression/normalization (DESeq2 and edgeR)
differential gene expression biologicalreplicates raw_counts written 5 months ago by tasnif.rahman • 0 • updated 5 months ago by James W. MacDonald ♦ 49k
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