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Comment: minfi support of illumina Infinium methylationEPIC v2.0
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luca.s
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40
Tank you James. All fine, but for preprocessIllumina, which apparently won't work
Comment: Time-course, comparison of two groups
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boczniak767
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720
As an exercise I've tried to analyze simpler but similar experiment. The data is from real experiment (E-MTAB-11224) comparing wild type an…
Answer: How to getting synonymous SNPs from BiomaRt before timing out?
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James W. MacDonald
62k
Asking for multiple things at once will tend to blow out your results, as you will get every possible combination.
```
> options(timeou…
Comment: Definition of disease_subtype abbreviations
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Lucas Schiffer
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240
Hi Sehyun, I do not know myself and can only find one reference in the [template.csv](https://github.com/waldronlab/curatedMetagenomicDataC…
Answer: Are polynomial contrasts for a time factor possible in DESeq2?
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ATpoint
★
2.4k
As you can use a model.matrix() as input for the design you can use a great variety of models. A great read is this work from Ritchie/Smyth…
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Gordon Smyth
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Robert Castelo
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