0
votes
0
answers
150
views
0
answers
1
vote
1
answer
116
views
1
answer
normalization of ChIP-seq
limma edger deseq2 written 7 weeks ago by Bogdan480 • updated 7 weeks ago by Ryan C. Thompson6.2k
4
votes
2
answers
154
views
2
answers
5
votes
2
answers
166
views
2
answers
4
votes
3
answers
157
views
3
answers
1
vote
1
answer
180
views
1
answer
Strange distribution of logFC
rnaseq edger deseq2 differential gene expression written 9 weeks ago by Claire0 • updated 9 weeks ago by Aaron Lun18k
1
vote
1
answer
107
views
1
answer
DGE analysis with TMM and gene length normalized data.
edger deseq2 tmm normalised values written 9 weeks ago by Saumya0010 • updated 9 weeks ago by Aaron Lun18k
0
votes
1
answer
164
views
1
answer
Adaptation of DESeq/edgeR model for CRISPR drop-out screen
edger deseq deseq2 crispr written 10 weeks ago by emanuelvgoncalves0 • updated 10 weeks ago by Aaron Lun18k
0
votes
0
answers
166
views
0
answers
0
votes
1
answer
225
views
1
answer
4
votes
2
answers
206
views
2
answers
14
votes
6
answers
1.6k
views
10 follow
6
answers
Diffbind: edgeR or DESeq2 ?
edger diffbind deseq2 medip-seq written 22 months ago by florian.noack60 • updated 11 weeks ago by Rory Stark2.2k
2
votes
2
answers
133
views
2
answers
edgeR - problem with glmQLFTest()
edger written 11 weeks ago by david.powell0 • updated 11 weeks ago by Gordon Smyth32k
0
votes
1
answer
98
views
1
answer
glmQLFTest, coef=2:4, decideTestDGE not working
edger dge coef written 12 weeks ago by rebeccajane930 • updated 12 weeks ago by Aaron Lun18k
0
votes
1
answer
110
views
1
answer
Running model separately for each cell line or as the same model?
rnaseq limma edger deseq2 written 12 weeks ago by Ahdee40 • updated 12 weeks ago by k.vitting.seerup20
2
votes
1
answer
156
views
1
answer
edgeR: PValue, adjusted PValue, FDR
edger written 12 weeks ago by zhxiaokang0 • updated 12 weeks ago by James W. MacDonald45k
6
votes
2
answers
191
views
2
answers
4
votes
1
answer
181
views
1
answer
4
votes
1
answer
206
views
1
answer
edgeR cpm filter
edger independent filtering multiple factor design cpm written 3 months ago by teshome.dagnem0 • updated 3 months ago by Gordon Smyth32k
0
votes
1
answer
124
views
1
answer
4
votes
3
answers
231
views
3
answers
Error in plot.new() : figure margins too large
edger written 3 months ago by mictadlo0 • updated 3 months ago by Gordon Smyth32k
3
votes
1
answer
138
views
1
answer
saving a plot as png and also showing inside Rstudio
edger ggplot2 written 3 months ago by mictadlo0 • updated 3 months ago by Aaron Lun18k
5
votes
1
answer
131
views
1
answer
How is it possible to get a legend outside plotMDS?
edger ggplot2 written 3 months ago by mictadlo0 • updated 3 months ago by James W. MacDonald45k
3
votes
1
answer
184
views
1
answer
0
votes
1
answer
142
views
1
answer
creating design and count matrix for rna-seq differential expression
rnaseq limma edger written 3 months ago by marongiu.luigi0 • updated 3 months ago by Aaron Lun18k
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