Showing: edgerreset
2
votes
1
answer
100
views
1
answer
edgeR DE analysis: single group combined factors or GLM with interaction term
edger glm written 7 weeks ago by jspmccain10 • updated 7 weeks ago by Aaron Lun22k
5
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1
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985
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1
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non-integer counts for edgeR
edger written 6.7 years ago by Gordon Smyth36k
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2
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90
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2
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Filtering, minimum sample number, and condition in edgeR
edger filtering written 7 weeks ago by rproendo0 • updated 7 weeks ago by Ryan C. Thompson7.1k
3
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1
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95
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1
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5
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2
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218
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edgeR paired samples with blocking
limma edger paired samples blocking written 8 weeks ago by anou0 • updated 8 weeks ago by Gordon Smyth36k
2
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1
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83
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1
answer
1
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1
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93
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1
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edgeR: boxplot the expression of a gene in two conditions after glmFit
edger written 8 weeks ago by zoppoli pietro10 • updated 8 weeks ago by Aaron Lun22k
1
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1
answer
207
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1
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EdgeR RNAseq -- best way to deal with random effects
rnaseq edger written 9 weeks ago by emb130 • updated 9 weeks ago by Aaron Lun22k
1
vote
1
answer
140
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1
answer
shRNA-Seq analysis using edgeR
edger experimental design model.matrix shrnaseq written 9 weeks ago by Assa Yeroslaviz1.4k • updated 9 weeks ago by Aaron Lun22k
1
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1
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134
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1
answer
4
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2
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112
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2
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0
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1
answer
92
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1
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edgeR 2-way ANOVA testing
edger anova written 10 weeks ago by martyna.broda0 • updated 10 weeks ago by Gordon Smyth36k
3
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2
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157
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2
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Method to get normalized counts in edgeR without cpm
normalization edger written 11 weeks ago by Pauline0 • updated 11 weeks ago by Gordon Smyth36k
0
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1
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116
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1
answer
RNAseq gene expression analysis in Personalized genomics
limma edger deseq2 tcga written 11 weeks ago by bioc.vkas0 • updated 11 weeks ago by Michael Love21k
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2
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121
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2
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0
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1
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130
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1
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2
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1
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139
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1
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p -values smaller than machine epsilon in edgeR
edger p values written 11 weeks ago by oscarf0 • updated 11 weeks ago by Gordon Smyth36k
3
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1
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128
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1
answer
1
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1
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180
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1
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edgeR package fails to load after install
edger install error written 12 weeks ago by jenny.russ0 • updated 12 weeks ago by Aaron Lun22k
2
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1
answer
141
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1
answer
Predict circadian expression with edgeR
edger circadian rhythms limorhyde written 12 weeks ago by ri.lars40 • updated 12 weeks ago by Aaron Lun22k
2
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1
answer
126
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1
answer
9
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2
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183
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5 follow
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Finding DE genes from RNA-seq data
qvalue edger differential gene expression fpkm pvalue written 12 weeks ago by Harrisonesmith0 • updated 12 weeks ago by Steve Lianoglou12k
0
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1
answer
118
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1
answer
model matrix for edgeR paired-design with batch effect
edger batch effect paired samples written 12 weeks ago by NGS-seeker0 • updated 12 weeks ago by Aaron Lun22k
0
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2
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139
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2
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Help with edgeR code - RNA-Seq Differental Gene Expression
rnaseq edger written 3 months ago by joseph.landry0 • updated 3 months ago by Gordon Smyth36k
1
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1
answer
122
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1
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Dispersion & FDR in edgeR
edger R written 3 months ago by Lisa0 • updated 3 months ago by Aaron Lun22k
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