13
votes
2
answers
1.5k
views
8 follow
2
answers
11
votes
4
answers
1.1k
views
6 follow
4
answers
14
votes
6
answers
2.1k
views
10 follow
6
answers
Diffbind: edgeR or DESeq2 ?
edger diffbind deseq2 medip-seq written 2.3 years ago by florian.noack60 • updated 7 months ago by Rory Stark2.5k
1
vote
0
answers
933
views
0
answers
dispersion in edgeR
sequencing edger written 8.0 years ago by Gordon Smyth33k
1
vote
1
answer
1.7k
views
1
answer
Defining the model matrix for a multi-factorial design with interactions - edgeR
edger written 4.4 years ago by Guest User12k • updated 4.4 years ago by Ryan C. Thompson6.8k
1
vote
1
answer
1.2k
views
1
answer
Multifactor model design for DE analysis (DESeq2 & edgeR)
cancer edger deseq2 written 3.8 years ago by Mathieu Bahin30 • updated 3.8 years ago by Simon Anders3.5k
7
votes
1
answer
855
views
5 follow
1
answer
Using edgeR on pre-post treatment control design
edger complex-design written 3.7 years ago by lwc62820 • updated 3.7 years ago by James W. MacDonald46k
3
votes
1
answer
1.3k
views
1
answer
edgeR setting up glm/contrasts/ANOVA-like tests
rnaseq edger written 3.7 years ago by ericalarson10 • updated 3.7 years ago by Aaron Lun19k
6
votes
4
answers
1.2k
views
4
answers
10
votes
1
answer
2.3k
views
1
answer
GLM Likelihood ratio test
rnaseq edger glm written 3.3 years ago by ygowtha0 • updated 3.3 years ago by Gordon Smyth33k
13
votes
6
answers
6.8k
views
8 follow
6
answers
5
votes
4
answers
2.6k
views
4
answers
10
votes
1
answer
2.0k
views
5 follow
1
answer
Bootstrap confidence intervals on RNA-seq expression from Kallisto
rnaseq limma edger deseq2 voom written 3.0 years ago by Sean Davis21k • updated 9 months ago by Paul Harrison60
12
votes
1
answer
1.3k
views
7 follow
1
answer
edgeR glmLRT with test="F"?
edger differential expression dge written 3.0 years ago by Ryan C. Thompson6.8k • updated 3.0 years ago by Aaron Lun19k
8
votes
1
answer
620
views
1
answer
NaN results on some pathways in CAMERA
edger camera pathway analysis written 3.0 years ago by Ryan C. Thompson6.8k • updated 3.0 years ago by Gordon Smyth33k
2
votes
0
answers
3.9k
views
0
answers
18
votes
2
answers
1.3k
views
2
answers
7
votes
1
answer
865
views
1
answer
6
votes
2
answers
1.6k
views
2
answers
8
votes
1
answer
1.1k
views
5 follow
1
answer
7
votes
2
answers
2.5k
views
5 follow
2
answers
Multi factor design edgeR/Deseq2
edger deseq2 rna-seq written 3.0 years ago by gthm20 • updated 3.0 years ago by Gordon Smyth33k
6
votes
3
answers
1.0k
views
6 follow
3
answers
edgeR vs glm.nb
edger glm written 2.9 years ago by dongamit12320
25
votes
2
answers
3.8k
views
2
answers
Normalization methodology in DESeq/DESeq2 vs edgeR
normalization edger deseq deseq2 written 2.6 years ago by Nik Tuzov60 • updated 2.6 years ago by Simon Anders3.5k
12
votes
3
answers
1.0k
views
5 follow
3
answers
14
votes
2
answers
1.4k
views
2
answers
Big differences in logfoldchange for some genes between edgeR and DESeq2
edger deseq2 written 2.6 years ago by Matarit10 • updated 2.6 years ago by Gordon Smyth33k
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