13
votes
2
answers
1.3k
views
8 follow
2
answers
11
votes
4
answers
884
views
6 follow
4
answers
14
votes
6
answers
1.7k
views
10 follow
6
answers
Diffbind: edgeR or DESeq2 ?
edger diffbind deseq2 medip-seq written 23 months ago by florian.noack60 • updated 3 months ago by Rory Stark2.3k
1
vote
0
answers
779
views
0
answers
dispersion in edgeR
sequencing edger written 7.7 years ago by Gordon Smyth32k
1
vote
1
answer
1.5k
views
1
answer
Defining the model matrix for a multi-factorial design with interactions - edgeR
edger written 4.1 years ago by Guest User12k • updated 4.1 years ago by Ryan C. Thompson6.3k
1
vote
1
answer
1.1k
views
1
answer
Multifactor model design for DE analysis (DESeq2 & edgeR)
cancer edger deseq2 written 3.5 years ago by Mathieu Bahin30 • updated 3.5 years ago by Simon Anders3.4k
3
votes
1
answer
1.2k
views
1
answer
edgeR setting up glm/contrasts/ANOVA-like tests
rnaseq edger written 3.4 years ago by ericalarson10 • updated 3.3 years ago by Aaron Lun18k
6
votes
4
answers
1.0k
views
4
answers
10
votes
1
answer
1.9k
views
1
answer
GLM Likelihood ratio test
rnaseq edger glm written 3.0 years ago by ygowtha0 • updated 3.0 years ago by Gordon Smyth32k
13
votes
6
answers
6.1k
views
8 follow
6
answers
5
votes
4
answers
2.2k
views
4
answers
10
votes
1
answer
1.8k
views
5 follow
1
answer
Bootstrap confidence intervals on RNA-seq expression from Kallisto
rnaseq limma edger deseq2 voom written 2.7 years ago by Sean Davis21k • updated 5 months ago by Paul Harrison60
12
votes
1
answer
1.1k
views
7 follow
1
answer
edgeR glmLRT with test="F"?
edger differential expression dge written 2.7 years ago by Ryan C. Thompson6.3k • updated 2.7 years ago by Aaron Lun18k
8
votes
1
answer
556
views
1
answer
NaN results on some pathways in CAMERA
edger camera pathway analysis written 2.7 years ago by Ryan C. Thompson6.3k • updated 2.7 years ago by Gordon Smyth32k
2
votes
0
answers
3.5k
views
0
answers
18
votes
2
answers
1.2k
views
2
answers
7
votes
1
answer
803
views
1
answer
6
votes
2
answers
1.4k
views
2
answers
8
votes
1
answer
950
views
5 follow
1
answer
6
votes
3
answers
918
views
6 follow
3
answers
edgeR vs glm.nb
edger glm written 2.6 years ago by dongamit12320
25
votes
2
answers
3.3k
views
2
answers
Normalization methodology in DESeq/DESeq2 vs edgeR
normalization edger deseq deseq2 written 2.3 years ago by Nik Tuzov60 • updated 2.3 years ago by Simon Anders3.4k
12
votes
3
answers
830
views
5 follow
3
answers
14
votes
2
answers
1.2k
views
2
answers
Big differences in logfoldchange for some genes between edgeR and DESeq2
edger deseq2 written 2.2 years ago by Matarit10 • updated 2.2 years ago by Gordon Smyth32k
2
votes
1
answer
518
views
1
answer
allele specific expression in edgeR/DESeq
edger deseq deseq2 written 2.2 years ago by gthm10 • updated 2.2 years ago by Aaron Lun18k
4
votes
1
answer
1.1k
views
1
answer
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