14
votes
6
answers
1.6k
views
10 follow
6
answers
Diffbind: edgeR or DESeq2 ?
edger diffbind deseq2 medip-seq written 22 months ago by florian.noack60 • updated 11 weeks ago by Rory Stark2.2k
24
votes
3
answers
1.3k
views
9 follow
3
answers
18
votes
2
answers
2.9k
views
8 follow
2
answers
Confidence intervals on edgeR logFC
edger statistics confidence interval written 3.3 years ago by ri.lars40 • updated 21 months ago by nwvidal0
13
votes
6
answers
5.9k
views
8 follow
6
answers
13
votes
2
answers
1.2k
views
8 follow
2
answers
9
votes
5
answers
5.3k
views
7 follow
5
answers
RNA-Seq, generate batch-free count matrix
edger sva written 3.5 years ago by Brian Haas50 • updated 3.3 years ago by Gordon Smyth32k
0
votes
2
answers
729
views
6 follow
2
answers
0
votes
1
answer
890
views
6 follow
1
answer
total count filter cutoff
edger written 3.7 years ago by Guest User12k • updated 3.7 years ago by Wolfgang Huber13k
11
votes
1
answer
1.0k
views
6 follow
1
answer
edgeR glmLRT with test="F"?
edger differential expression dge written 2.6 years ago by Ryan C. Thompson6.2k • updated 2.6 years ago by Aaron Lun18k
6
votes
3
answers
871
views
6 follow
3
answers
edgeR vs glm.nb
edger glm written 2.5 years ago by dongamit12320
11
votes
4
answers
840
views
6 follow
4
answers
12
votes
2
answers
1.5k
views
6 follow
2
answers
11
votes
1
answer
538
views
6 follow
1
answer
8
votes
2
answers
265
views
6 follow
2
answers
0
votes
1
answer
541
views
5 follow
1
answer
Odd contrast; does it make statistical sense?
edger written 4.0 years ago by Ryan C. Thompson6.2k • updated 4.0 years ago by Gordon Smyth32k
0
votes
1
answer
2.0k
views
5 follow
1
answer
limma-voom
rnaseq normalization limma edger written 4.0 years ago by Ming Yi340 • updated 4.0 years ago by Gordon Smyth32k
14
votes
1
answer
2.4k
views
5 follow
1
answer
Differences between limma voom E values and edgeR cpm values?
edger written 3.7 years ago by John Brothers II60 • updated 3.3 years ago by Gordon Smyth32k
20
votes
2
answers
7.8k
views
5 follow
2
answers
10
votes
1
answer
1.7k
views
5 follow
1
answer
Bootstrap confidence intervals on RNA-seq expression from Kallisto
rnaseq limma edger deseq2 voom written 2.6 years ago by Sean Davis21k • updated 4 months ago by Paul Harrison60
8
votes
1
answer
906
views
5 follow
1
answer
12
votes
3
answers
761
views
5 follow
3
answers
10
votes
2
answers
3.7k
views
5 follow
2
answers
edgeR TMM values
edger written 2.0 years ago by riccardo40
6
votes
2
answers
614
views
5 follow
2
answers
Appropriate ways to filter counts data for voom/limma
sequencing limma edger written 17 months ago by blofeld0 • updated 17 months ago by Gordon Smyth32k
7
votes
1
answer
772
views
5 follow
1
answer
0
votes
1
answer
574
views
1
answer
Experimental design for RNA-Seq
edger degseq deseq written 7.7 years ago by michael watson IAH-C3.4k • updated 7.7 years ago by Naomi Altman6.0k
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