14
votes
6
answers
1.9k
views
10 follow
6
answers
Diffbind: edgeR or DESeq2 ?
edger diffbind deseq2 medip-seq written 2.1 years ago by florian.noack60 • updated 5 months ago by Rory Stark2.4k
24
votes
3
answers
1.7k
views
9 follow
3
answers
18
votes
2
answers
3.2k
views
8 follow
2
answers
Confidence intervals on edgeR logFC
edger statistics confidence interval written 3.6 years ago by ri.lars40 • updated 2.0 years ago by nwvidal0
13
votes
6
answers
6.5k
views
8 follow
6
answers
13
votes
2
answers
1.4k
views
8 follow
2
answers
11
votes
5
answers
5.8k
views
7 follow
5
answers
RNA-Seq, generate batch-free count matrix
edger sva written 3.8 years ago by Brian Haas60 • updated 3.5 years ago by Gordon Smyth33k
12
votes
1
answer
1.2k
views
7 follow
1
answer
edgeR glmLRT with test="F"?
edger differential expression dge written 2.9 years ago by Ryan C. Thompson6.5k • updated 2.9 years ago by Aaron Lun19k
12
votes
1
answer
637
views
7 follow
1
answer
0
votes
2
answers
793
views
6 follow
2
answers
0
votes
1
answer
1.0k
views
6 follow
1
answer
total count filter cutoff
edger written 4.0 years ago by Guest User12k • updated 4.0 years ago by Wolfgang Huber13k
6
votes
3
answers
988
views
6 follow
3
answers
edgeR vs glm.nb
edger glm written 2.8 years ago by dongamit12320
11
votes
4
answers
970
views
6 follow
4
answers
12
votes
2
answers
1.8k
views
6 follow
2
answers
8
votes
2
answers
391
views
6 follow
2
answers
0
votes
1
answer
596
views
5 follow
1
answer
Odd contrast; does it make statistical sense?
edger written 4.2 years ago by Ryan C. Thompson6.5k • updated 4.2 years ago by Gordon Smyth33k
0
votes
1
answer
2.2k
views
5 follow
1
answer
limma-voom
rnaseq normalization limma edger written 4.2 years ago by Ming Yi340 • updated 4.2 years ago by Gordon Smyth33k
14
votes
1
answer
2.7k
views
5 follow
1
answer
Differences between limma voom E values and edgeR cpm values?
edger written 3.9 years ago by John Brothers II60 • updated 3.6 years ago by Gordon Smyth33k
20
votes
2
answers
8.5k
views
5 follow
2
answers
10
votes
1
answer
1.9k
views
5 follow
1
answer
Bootstrap confidence intervals on RNA-seq expression from Kallisto
rnaseq limma edger deseq2 voom written 2.9 years ago by Sean Davis21k • updated 7 months ago by Paul Harrison60
8
votes
1
answer
1.0k
views
5 follow
1
answer
12
votes
3
answers
924
views
5 follow
3
answers
10
votes
2
answers
2.4k
views
5 follow
2
answers
How to determine which edgeR glmFit and glmQLFit are better
edger written 2.3 years ago by changjiang.h.xu0 • updated 2.3 years ago by Gordon Smyth33k
10
votes
2
answers
4.9k
views
5 follow
2
answers
edgeR TMM values
edger written 2.3 years ago by riccardo40
6
votes
2
answers
723
views
5 follow
2
answers
Appropriate ways to filter counts data for voom/limma
sequencing limma edger written 20 months ago by blofeld0 • updated 20 months ago by Gordon Smyth33k
7
votes
1
answer
944
views
5 follow
1
answer
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