14
votes
6
answers
2.2k
views
10 follow
6
answers
Diffbind: edgeR or DESeq2 ?
edger diffbind deseq2 medip-seq written 2.4 years ago by florian.noack60 • updated 8 months ago by Rory Stark2.5k
24
votes
3
answers
2.1k
views
9 follow
3
answers
18
votes
2
answers
3.4k
views
8 follow
2
answers
Confidence intervals on edgeR logFC
edger statistics confidence interval written 3.8 years ago by ri.lars40 • updated 2.3 years ago by nwvidal0
13
votes
6
answers
6.9k
views
8 follow
6
answers
13
votes
2
answers
1.6k
views
8 follow
2
answers
13
votes
2
answers
2.0k
views
8 follow
2
answers
11
votes
5
answers
6.3k
views
7 follow
5
answers
RNA-Seq, generate batch-free count matrix
edger sva written 4.0 years ago by Brian Haas60 • updated 3.8 years ago by Gordon Smyth34k
12
votes
1
answer
1.4k
views
7 follow
1
answer
edgeR glmLRT with test="F"?
edger differential expression dge written 3.1 years ago by Ryan C. Thompson6.8k • updated 3.1 years ago by Aaron Lun20k
12
votes
1
answer
720
views
7 follow
1
answer
8
votes
2
answers
544
views
7 follow
2
answers
0
votes
2
answers
847
views
6 follow
2
answers
0
votes
1
answer
1.1k
views
6 follow
1
answer
total count filter cutoff
edger written 4.2 years ago by Guest User12k • updated 4.2 years ago by Wolfgang Huber13k
6
votes
3
answers
1.1k
views
6 follow
3
answers
edgeR vs glm.nb
edger glm written 3.0 years ago by dongamit12320
11
votes
4
answers
1.1k
views
6 follow
4
answers
0
votes
1
answer
632
views
5 follow
1
answer
Odd contrast; does it make statistical sense?
edger written 4.5 years ago by Ryan C. Thompson6.8k • updated 4.5 years ago by Gordon Smyth34k
0
votes
1
answer
2.5k
views
5 follow
1
answer
limma-voom
rnaseq normalization limma edger written 4.5 years ago by Ming Yi340 • updated 4.5 years ago by Gordon Smyth34k
14
votes
1
answer
3.0k
views
5 follow
1
answer
Differences between limma voom E values and edgeR cpm values?
edger written 4.2 years ago by John Brothers II60 • updated 3.8 years ago by Gordon Smyth34k
7
votes
1
answer
878
views
5 follow
1
answer
Using edgeR on pre-post treatment control design
edger complex-design written 3.8 years ago by lwc62820 • updated 3.8 years ago by James W. MacDonald46k
20
votes
2
answers
9.3k
views
5 follow
2
answers
10
votes
1
answer
2.0k
views
5 follow
1
answer
Bootstrap confidence intervals on RNA-seq expression from Kallisto
rnaseq limma edger deseq2 voom written 3.1 years ago by Sean Davis21k • updated 10 months ago by Paul Harrison60
8
votes
1
answer
1.1k
views
5 follow
1
answer
7
votes
2
answers
2.6k
views
5 follow
2
answers
Multi factor design edgeR/Deseq2
edger deseq2 rna-seq written 3.0 years ago by gthm20 • updated 3.0 years ago by Gordon Smyth34k
12
votes
3
answers
1.0k
views
5 follow
3
answers
10
votes
2
answers
2.7k
views
5 follow
2
answers
How to determine which edgeR glmFit and glmQLFit are better
edger written 2.5 years ago by changjiang.h.xu0 • updated 2.5 years ago by Gordon Smyth34k
10
votes
2
answers
6.0k
views
5 follow
2
answers
edgeR TMM values
edger written 2.5 years ago by riccardo50
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