0
votes
0
answers
19k
views
0
answers
11
votes
1
answer
14k
views
1
answer
RPKM, CPM and TMM
rnaseq edger differential expression written 3.2 years ago by Pauly Lin80 • updated 3.2 years ago by Aaron Lun21k
0
votes
1
answer
10k
views
1
answer
EdgeR LogCpm and LogFC values calculation
edger written 4.6 years ago by Gordon Smyth35k • updated 4.6 years ago by Koen Van den Berge110
20
votes
2
answers
9.6k
views
5 follow
2
answers
10
votes
2
answers
9.1k
views
2
answers
FDR and padj in deseq and edger
edger deseq2 written 2.9 years ago by tonja.r40 • updated 2.9 years ago by Gordon Smyth35k
3
votes
2
answers
8.7k
views
2
answers
how to calculate gene length to be used in rpkm() in edgeR
rnaseq edger rpkm written 4.4 years ago by shirley zhang1.0k • updated 3.9 years ago by Gordon Smyth35k
3
votes
2
answers
7.6k
views
2
answers
edgeR rpkm function
edger rpkm written 3.6 years ago by Makis Motakis20 • updated 3.6 years ago by Gordon Smyth35k
0
votes
2
answers
7.4k
views
2
answers
Applying DESeq on RSEM output
edger deseq written 5.5 years ago by dvir.tau@gmail.com30 • updated 5.5 years ago by Simon Anders3.5k
4
votes
4
answers
7.4k
views
4
answers
1
vote
3
answers
7.3k
views
3
answers
0
votes
2
answers
7.2k
views
2
answers
edgeR warnings and then error
edger written 5.9 years ago by john herbert560 • updated 5.9 years ago by Gordon Smyth35k
13
votes
6
answers
7.2k
views
8 follow
6
answers
10
votes
2
answers
6.8k
views
5 follow
2
answers
edgeR TMM values
edger written 2.7 years ago by riccardo50
11
votes
5
answers
6.6k
views
7 follow
5
answers
RNA-Seq, generate batch-free count matrix
edger sva written 4.2 years ago by Brian Haas60 • updated 3.9 years ago by Gordon Smyth35k
2
votes
1
answer
6.3k
views
1
answer
How can I get the normalized read counts from TMM?
normalization edger written 5.9 years ago by Reanne Bowlby20 • updated 5.9 years ago by Mark Robinson870
0
votes
1
answer
5.9k
views
1
answer
Error in colSums(counts) : 'x' must be numeric
edger written 7.0 years ago by Khan, Saad M. MU-Student10 • updated 7.0 years ago by Vincent J. Carey, Jr.6.2k
3
votes
2
answers
5.6k
views
2
answers
Batch effect removal in edgeR
edger batch effect written 3.7 years ago by candida.vaz30 • updated 3.7 years ago by Gordon Smyth35k
3
votes
3
answers
5.6k
views
3
answers
P Value of 0?
edger differential gene expression written 3.6 years ago by dsperley0 • updated 3.6 years ago by Matthew McCormack160
0
votes
1
answer
4.9k
views
1
answer
edgeR: Value of variation of biological variation (BCV)
edger written 6.1 years ago by KJ Lim420 • updated 6.1 years ago by Gordon Smyth35k
0
votes
1
answer
4.8k
views
1
answer
Remove batch effects from RNA-seq data using edgeR and sva/ComBat
go edger written 5.3 years ago by David O'Brien10 • updated 5.3 years ago by Gordon Smyth35k
0
votes
4
answers
4.5k
views
4
answers
edgeR cpm filtering
edger written 5.6 years ago by Guest User12k • updated 5.6 years ago by John Sperry20
0
votes
1
answer
4.4k
views
1
answer
0
votes
1
answer
4.4k
views
1
answer
edgeR vs DESeq for comparison without replicate
edger deseq written 7.2 years ago by Woo, Sangsoon20 • updated 7.2 years ago by Davis McCarthy260
6
votes
2
answers
4.3k
views
2
answers
EdgeR Design matrix not of full rank
edger written 3.3 years ago by kjclowers0 • updated 3.3 years ago by Gordon Smyth35k
3
votes
2
answers
4.3k
views
2
answers
Remove batch effect in small RNASeq study (SVA or others?)
rnaseq alignment edger sva written 4.4 years ago by shirley zhang1.0k • updated 3.7 years ago by Gordon Smyth35k
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