0
votes
0
answers
16k
views
0
answers
9
votes
1
answer
10.0k
views
1
answer
RPKM, CPM and TMM
rnaseq edger differential expression written 2.4 years ago by Pauly Lin60 • updated 2.4 years ago by Aaron Lun17k
0
votes
1
answer
8.1k
views
1
answer
EdgeR LogCpm and LogFC values calculation
edger written 3.8 years ago by Gordon Smyth32k • updated 3.8 years ago by Koen Van den Berge90
20
votes
2
answers
7.4k
views
5 follow
2
answers
1
vote
2
answers
6.6k
views
2
answers
how to calculate gene length to be used in rpkm() in edgeR
rnaseq edger rpkm written 3.6 years ago by shirley zhang1.0k • updated 3.1 years ago by Gordon Smyth32k
0
votes
2
answers
6.4k
views
2
answers
edgeR warnings and then error
edger written 5.0 years ago by john herbert550 • updated 5.0 years ago by Gordon Smyth32k
0
votes
2
answers
6.1k
views
2
answers
Applying DESeq on RSEM output
edger deseq written 4.7 years ago by dvir.tau@gmail.com30 • updated 4.7 years ago by Simon Anders3.4k
13
votes
6
answers
5.6k
views
8 follow
6
answers
1
vote
3
answers
5.5k
views
3
answers
2
votes
4
answers
5.4k
views
4
answers
1
vote
2
answers
5.3k
views
2
answers
edgeR rpkm function
edger rpkm written 2.8 years ago by Makis Motakis20 • updated 2.8 years ago by Gordon Smyth32k
9
votes
2
answers
5.1k
views
2
answers
FDR and padj in deseq and edger
edger deseq2 written 2.1 years ago by tonja.r40 • updated 2.1 years ago by Gordon Smyth32k
7
votes
5
answers
5.0k
views
6 follow
5
answers
RNA-Seq, generate batch-free count matrix
edger sva written 3.3 years ago by Brian Haas50 • updated 3.1 years ago by Gordon Smyth32k
2
votes
1
answer
4.9k
views
1
answer
How can I get the normalized read counts from TMM?
normalization edger written 5.1 years ago by Reanne Bowlby20 • updated 5.1 years ago by Mark Robinson870
3
votes
2
answers
4.3k
views
2
answers
Batch effect removal in edgeR
edger batch effect written 2.8 years ago by candida.vaz30 • updated 2.8 years ago by Gordon Smyth32k
0
votes
1
answer
4.0k
views
1
answer
Error in colSums(counts) : 'x' must be numeric
edger written 6.2 years ago by Khan, Saad M. MU-Student10 • updated 6.2 years ago by Vincent J. Carey, Jr.6.2k
0
votes
1
answer
4.0k
views
1
answer
Remove batch effects from RNA-seq data using edgeR and sva/ComBat
go edger written 4.5 years ago by David O'Brien10 • updated 4.5 years ago by Gordon Smyth32k
0
votes
1
answer
3.5k
views
1
answer
edgeR: Value of variation of biological variation (BCV)
edger written 5.3 years ago by KJ Lim420 • updated 5.3 years ago by Gordon Smyth32k
3
votes
3
answers
3.5k
views
3
answers
P Value of 0?
edger differential gene expression written 2.8 years ago by dsperley0 • updated 2.8 years ago by Matthew McCormack160
3
votes
2
answers
3.5k
views
2
answers
Remove batch effect in small RNASeq study (SVA or others?)
rnaseq alignment edger sva written 3.6 years ago by shirley zhang1.0k • updated 2.8 years ago by Gordon Smyth32k
0
votes
1
answer
3.4k
views
1
answer
0
votes
2
answers
3.3k
views
2
answers
0
votes
4
answers
3.3k
views
4
answers
edgeR cpm filtering
edger written 4.8 years ago by Guest User12k • updated 4.8 years ago by John Sperry20
0
votes
1
answer
3.2k
views
1
answer
2
votes
0
answers
3.2k
views
0
answers
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