10
votes
1
answer
2.1k
views
5 follow
1
answer
Bootstrap confidence intervals on RNA-seq expression from Kallisto
rnaseq limma edger deseq2 voom written 3.4 years ago by Sean Davis21k • updated 12 months ago by Paul Harrison60
14
votes
1
answer
3.2k
views
5 follow
1
answer
Differences between limma voom E values and edgeR cpm values?
edger written 4.4 years ago by John Brothers II60 • updated 4.0 years ago by Gordon Smyth35k
18
votes
2
answers
3.6k
views
8 follow
2
answers
Confidence intervals on edgeR logFC
edger statistics confidence interval written 4.1 years ago by ri.lars40 • updated 2.5 years ago by nwvidal0
18
votes
2
answers
1.4k
views
2
answers
13
votes
2
answers
1.7k
views
8 follow
2
answers
14
votes
6
answers
2.4k
views
10 follow
6
answers
Diffbind: edgeR or DESeq2 ?
edger diffbind deseq2 medip-seq written 2.6 years ago by florian.noack60 • updated 11 months ago by Rory Stark2.5k
3
votes
1
answer
859
views
1
answer
non-integer counts for edgeR
edger written 6.4 years ago by Gordon Smyth35k
11
votes
4
answers
1.3k
views
6 follow
4
answers
15
votes
2
answers
914
views
6 follow
2
answers
11
votes
5
answers
6.7k
views
7 follow
5
answers
RNA-Seq, generate batch-free count matrix
edger sva written 4.2 years ago by Brian Haas60 • updated 4.0 years ago by Gordon Smyth35k
7
votes
1
answer
941
views
5 follow
1
answer
Using edgeR on pre-post treatment control design
edger complex-design written 4.0 years ago by lwc62820 • updated 4.0 years ago by James W. MacDonald48k
20
votes
2
answers
9.8k
views
5 follow
2
answers
6
votes
4
answers
1.4k
views
4
answers
12
votes
1
answer
1.5k
views
7 follow
1
answer
edgeR glmLRT with test="F"?
edger differential expression dge written 3.4 years ago by Ryan C. Thompson6.9k • updated 3.4 years ago by Aaron Lun21k
8
votes
1
answer
671
views
1
answer
NaN results on some pathways in CAMERA
edger camera pathway analysis written 3.3 years ago by Ryan C. Thompson6.9k • updated 3.3 years ago by Gordon Smyth35k
8
votes
1
answer
1.2k
views
5 follow
1
answer
4
votes
1
answer
682
views
1
answer
Using limma::roast/camera/romer etc from DESeq2
limma edger camera deseq2 romer written 3.1 years ago by phil.chapman140 • updated 3.1 years ago by Gordon Smyth35k
25
votes
2
answers
4.1k
views
2
answers
Normalization methodology in DESeq/DESeq2 vs edgeR
normalization edger deseq deseq2 written 2.9 years ago by Nik Tuzov70 • updated 2.9 years ago by Simon Anders3.5k
12
votes
3
answers
1.1k
views
5 follow
3
answers
6
votes
2
answers
557
views
2
answers
4
votes
5
answers
586
views
5
answers
3
votes
1
answer
605
views
1
answer
Hill in P-value distribution for heterogenous ChIP-seq samples
limma edger sva csaw qsmooth written 20 months ago by jma199130 • updated 20 months ago by Aaron Lun21k
10
votes
2
answers
801
views
2
answers
3
votes
1
answer
172
views
1
answer
Error in glmFit.default() : y is not a numeric matrix
edger written 7 weeks ago by borpano20 • updated 7 weeks ago by Aaron Lun21k
6
votes
1
answer
71
views
5 follow
1
answer
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