10
votes
1
answer
1.6k
views
5 follow
1
answer
14
votes
1
answer
2.2k
views
5 follow
1
answer
Differences between limma voom E values and edgeR cpm values?
edger written 3.5 years ago by John Brothers II60 • updated 3.1 years ago by Gordon Smyth32k
18
votes
2
answers
2.7k
views
8 follow
2
answers
Confidence intervals on edgeR logFC
edger statistics confidence interval written 3.2 years ago by ri.lars40 • updated 19 months ago by nwvidal0
18
votes
2
answers
1.1k
views
2
answers
14
votes
6
answers
1.5k
views
10 follow
6
answers
Diffbind: edgeR or DESeq2 ?
edger diffbind deseq2 medip-seq written 20 months ago by florian.noack60 • updated 18 days ago by Rory Stark2.1k
3
votes
1
answer
638
views
1
answer
non-integer counts for edgeR
edger written 5.5 years ago by Gordon Smyth32k
12
votes
2
answers
1.1k
views
6 follow
2
answers
11
votes
4
answers
755
views
6 follow
4
answers
20
votes
2
answers
7.4k
views
5 follow
2
answers
6
votes
4
answers
904
views
4
answers
11
votes
1
answer
938
views
6 follow
1
answer
edgeR glmLRT with test="F"?
edger differential expression dge written 2.4 years ago by Ryan C. Thompson6.1k • updated 2.4 years ago by Aaron Lun17k
8
votes
1
answer
498
views
1
answer
NaN results on some pathways in CAMERA
edger camera pathway analysis written 2.4 years ago by Ryan C. Thompson6.1k • updated 2.4 years ago by Gordon Smyth32k
8
votes
1
answer
847
views
5 follow
1
answer
25
votes
2
answers
3.0k
views
2
answers
Normalization methodology in DESeq/DESeq2 vs edgeR
normalization edger deseq deseq2 written 2.0 years ago by Nik Tuzov60 • updated 2.0 years ago by Simon Anders3.4k
12
votes
3
answers
684
views
5 follow
3
answers
6
votes
2
answers
399
views
2
answers
4
votes
5
answers
372
views
5
answers
3
votes
1
answer
342
views
1
answer
Hill in P-value distribution for heterogenous ChIP-seq samples
limma edger sva csaw qsmooth written 9 months ago by jma199130 • updated 9 months ago by Aaron Lun17k
2
votes
2
answers
1.1k
views
2
answers
edgeR - technical and biological replication
edger written 7.6 years ago by Jakob Hedegaard160 • updated 7.6 years ago by Gordon Smyth32k
1
vote
0
answers
682
views
0
answers
dispersion in edgeR
sequencing edger written 7.4 years ago by Gordon Smyth32k
1
vote
0
answers
563
views
0
answers
BaseCounts & edgeR
limma edger deseq written 5.8 years ago by Gordon Smyth32k
2
votes
1
answer
4.8k
views
1
answer
How can I get the normalized read counts from TMM?
normalization edger written 5.1 years ago by Reanne Bowlby20 • updated 5.1 years ago by Mark Robinson870
1
vote
1
answer
1.4k
views
1
answer
Defining the model matrix for a multi-factorial design with interactions - edgeR
edger written 3.8 years ago by Guest User12k • updated 3.8 years ago by Ryan C. Thompson6.1k
2
votes
2
answers
1.3k
views
2
answers
1
vote
5
answers
1.7k
views
5
answers
EdgeR: replicated pools, yes or not?
rnaseq microarray edger written 3.6 years ago by Guest User12k • updated 3.6 years ago by Ryan C. Thompson6.1k
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