10
votes
1
answer
1.9k
views
5 follow
1
answer
Bootstrap confidence intervals on RNA-seq expression from Kallisto
rnaseq limma edger deseq2 voom written 2.9 years ago by Sean Davis21k • updated 7 months ago by Paul Harrison60
14
votes
1
answer
2.7k
views
5 follow
1
answer
Differences between limma voom E values and edgeR cpm values?
edger written 3.9 years ago by John Brothers II60 • updated 3.6 years ago by Gordon Smyth33k
18
votes
2
answers
3.2k
views
8 follow
2
answers
Confidence intervals on edgeR logFC
edger statistics confidence interval written 3.6 years ago by ri.lars40 • updated 2.0 years ago by nwvidal0
18
votes
2
answers
1.3k
views
2
answers
13
votes
2
answers
1.4k
views
8 follow
2
answers
14
votes
6
answers
1.9k
views
10 follow
6
answers
Diffbind: edgeR or DESeq2 ?
edger diffbind deseq2 medip-seq written 2.1 years ago by florian.noack60 • updated 5 months ago by Rory Stark2.4k
3
votes
1
answer
736
views
1
answer
non-integer counts for edgeR
edger written 5.9 years ago by Gordon Smyth33k
11
votes
4
answers
970
views
6 follow
4
answers
11
votes
5
answers
5.8k
views
7 follow
5
answers
RNA-Seq, generate batch-free count matrix
edger sva written 3.8 years ago by Brian Haas60 • updated 3.5 years ago by Gordon Smyth33k
20
votes
2
answers
8.5k
views
5 follow
2
answers
6
votes
4
answers
1.1k
views
4
answers
12
votes
1
answer
1.2k
views
7 follow
1
answer
edgeR glmLRT with test="F"?
edger differential expression dge written 2.9 years ago by Ryan C. Thompson6.5k • updated 2.9 years ago by Aaron Lun19k
8
votes
1
answer
580
views
1
answer
NaN results on some pathways in CAMERA
edger camera pathway analysis written 2.8 years ago by Ryan C. Thompson6.5k • updated 2.8 years ago by Gordon Smyth33k
8
votes
1
answer
1.0k
views
5 follow
1
answer
25
votes
2
answers
3.5k
views
2
answers
Normalization methodology in DESeq/DESeq2 vs edgeR
normalization edger deseq deseq2 written 2.4 years ago by Nik Tuzov60 • updated 2.4 years ago by Simon Anders3.4k
12
votes
3
answers
923
views
5 follow
3
answers
6
votes
2
answers
467
views
2
answers
4
votes
5
answers
485
views
5
answers
3
votes
1
answer
465
views
1
answer
Hill in P-value distribution for heterogenous ChIP-seq samples
limma edger sva csaw qsmooth written 14 months ago by jma199130 • updated 14 months ago by Aaron Lun19k
2
votes
2
answers
1.2k
views
2
answers
edgeR - technical and biological replication
edger written 8.0 years ago by Jakob Hedegaard160 • updated 8.0 years ago by Gordon Smyth33k
1
vote
0
answers
853
views
0
answers
dispersion in edgeR
sequencing edger written 7.8 years ago by Gordon Smyth33k
1
vote
0
answers
629
views
0
answers
BaseCounts & edgeR
limma edger deseq written 6.2 years ago by Gordon Smyth33k
3
votes
2
answers
2.2k
views
2
answers
edgeR reading data
edger written 6.0 years ago by Wang, Li180 • updated 6.0 years ago by Gordon Smyth33k
2
votes
1
answer
5.6k
views
1
answer
How can I get the normalized read counts from TMM?
normalization edger written 5.5 years ago by Reanne Bowlby20 • updated 5.5 years ago by Mark Robinson870
1
vote
1
answer
1.6k
views
1
answer
Defining the model matrix for a multi-factorial design with interactions - edgeR
edger written 4.2 years ago by Guest User12k • updated 4.2 years ago by Ryan C. Thompson6.5k
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