10
votes
1
answer
1.7k
views
5 follow
1
answer
Bootstrap confidence intervals on RNA-seq expression from Kallisto
rnaseq limma edger deseq2 voom written 2.6 years ago by Sean Davis21k • updated 4 months ago by Paul Harrison60
14
votes
1
answer
2.4k
views
5 follow
1
answer
Differences between limma voom E values and edgeR cpm values?
edger written 3.7 years ago by John Brothers II60 • updated 3.3 years ago by Gordon Smyth32k
18
votes
2
answers
2.9k
views
8 follow
2
answers
Confidence intervals on edgeR logFC
edger statistics confidence interval written 3.3 years ago by ri.lars40 • updated 21 months ago by nwvidal0
18
votes
2
answers
1.2k
views
2
answers
13
votes
2
answers
1.2k
views
8 follow
2
answers
14
votes
6
answers
1.6k
views
10 follow
6
answers
Diffbind: edgeR or DESeq2 ?
edger diffbind deseq2 medip-seq written 22 months ago by florian.noack60 • updated 11 weeks ago by Rory Stark2.2k
3
votes
1
answer
683
views
1
answer
non-integer counts for edgeR
edger written 5.7 years ago by Gordon Smyth32k
11
votes
4
answers
840
views
6 follow
4
answers
20
votes
2
answers
7.8k
views
5 follow
2
answers
6
votes
4
answers
957
views
4
answers
11
votes
1
answer
1.0k
views
6 follow
1
answer
edgeR glmLRT with test="F"?
edger differential expression dge written 2.6 years ago by Ryan C. Thompson6.2k • updated 2.6 years ago by Aaron Lun18k
8
votes
1
answer
531
views
1
answer
NaN results on some pathways in CAMERA
edger camera pathway analysis written 2.6 years ago by Ryan C. Thompson6.2k • updated 2.6 years ago by Gordon Smyth32k
8
votes
1
answer
906
views
5 follow
1
answer
25
votes
2
answers
3.2k
views
2
answers
Normalization methodology in DESeq/DESeq2 vs edgeR
normalization edger deseq deseq2 written 2.2 years ago by Nik Tuzov60 • updated 2.2 years ago by Simon Anders3.4k
12
votes
3
answers
761
views
5 follow
3
answers
6
votes
2
answers
426
views
2
answers
4
votes
5
answers
421
views
5
answers
3
votes
1
answer
390
views
1
answer
Hill in P-value distribution for heterogenous ChIP-seq samples
limma edger sva csaw qsmooth written 11 months ago by jma199130 • updated 11 months ago by Aaron Lun18k
2
votes
2
answers
1.1k
views
2
answers
edgeR - technical and biological replication
edger written 7.7 years ago by Jakob Hedegaard160 • updated 7.7 years ago by Gordon Smyth32k
1
vote
0
answers
738
views
0
answers
dispersion in edgeR
sequencing edger written 7.6 years ago by Gordon Smyth32k
1
vote
0
answers
588
views
0
answers
BaseCounts & edgeR
limma edger deseq written 6.0 years ago by Gordon Smyth32k
2
votes
1
answer
5.1k
views
1
answer
How can I get the normalized read counts from TMM?
normalization edger written 5.3 years ago by Reanne Bowlby20 • updated 5.3 years ago by Mark Robinson870
1
vote
1
answer
1.5k
views
1
answer
Defining the model matrix for a multi-factorial design with interactions - edgeR
edger written 4.0 years ago by Guest User12k • updated 4.0 years ago by Ryan C. Thompson6.2k
2
votes
2
answers
1.4k
views
2
answers
1
vote
5
answers
1.8k
views
5
answers
EdgeR: replicated pools, yes or not?
rnaseq microarray edger written 3.8 years ago by Guest User12k • updated 3.7 years ago by Ryan C. Thompson6.2k
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