Showing: edgerreset
16
votes
6
answers
2.9k
views
11 follow
6
answers
Diffbind: edgeR or DESeq2 ?
edger diffbind deseq2 medip-seq written 3.0 years ago by florian.noack60 • updated 16 months ago by Rory Stark2.7k
12
votes
5
answers
7.4k
views
9 follow
5
answers
RNA-Seq, generate batch-free count matrix
edger sva written 4.7 years ago by Brian Haas90 • updated 4.4 years ago by Gordon Smyth36k
24
votes
3
answers
3.3k
views
9 follow
3
answers
18
votes
2
answers
4.0k
views
8 follow
2
answers
Confidence intervals on edgeR logFC
edger statistics confidence interval written 4.5 years ago by ri.lars40 • updated 3.0 years ago by nwvidal0
13
votes
6
answers
8.2k
views
8 follow
6
answers
13
votes
2
answers
2.1k
views
8 follow
2
answers
16
votes
2
answers
2.8k
views
8 follow
2
answers
1
vote
1
answer
3.1k
views
7 follow
1
answer
limma-voom
rnaseq normalization limma edger written 5.1 years ago by Ming Yi350 • updated 5.1 years ago by Gordon Smyth36k
12
votes
1
answer
1.8k
views
7 follow
1
answer
edgeR glmLRT with test="F"?
edger differential expression dge written 3.8 years ago by Ryan C. Thompson7.2k • updated 3.8 years ago by Aaron Lun23k
12
votes
1
answer
920
views
7 follow
1
answer
10
votes
2
answers
1.2k
views
7 follow
2
answers
differential expression analysis of htseq data with edgeR/voom
limma edger voom htseq rnaseq123 written 21 months ago by wd20 • updated 10 weeks ago by Gordon Smyth36k
8
votes
2
answers
1.1k
views
7 follow
2
answers
0
votes
2
answers
1.1k
views
6 follow
2
answers
0
votes
1
answer
1.4k
views
6 follow
1
answer
total count filter cutoff
edger written 4.9 years ago by Guest User12k • updated 4.9 years ago by Wolfgang Huber13k
6
votes
3
answers
1.3k
views
6 follow
3
answers
edgeR vs glm.nb
edger glm written 3.7 years ago by dongamit12320
11
votes
4
answers
1.5k
views
6 follow
4
answers
15
votes
2
answers
1.1k
views
6 follow
2
answers
8
votes
2
answers
1.2k
views
6 follow
2
answers
Appropriate ways to filter counts data for voom/limma
sequencing limma edger written 2.6 years ago by blofeld10 • updated 2.6 years ago by Gordon Smyth36k
0
votes
1
answer
766
views
5 follow
1
answer
Odd contrast; does it make statistical sense?
edger written 5.2 years ago by Ryan C. Thompson7.2k • updated 5.2 years ago by Gordon Smyth36k
14
votes
1
answer
3.7k
views
5 follow
1
answer
Differences between limma voom E values and edgeR cpm values?
edger written 4.8 years ago by John Brothers II60 • updated 4.5 years ago by Gordon Smyth36k
7
votes
1
answer
1.1k
views
5 follow
1
answer
Using edgeR on pre-post treatment control design
edger complex-design written 4.4 years ago by lwc62820 • updated 4.4 years ago by James W. MacDonald49k
20
votes
2
answers
11k
views
5 follow
2
answers
8
votes
4
answers
1.2k
views
5 follow
4
answers
summarizing shRNA data per gene with edgeR
edger written 4.1 years ago by vladot0 • updated 4.1 years ago by Wolfgang Huber13k
10
votes
1
answer
2.3k
views
5 follow
1
answer
Bootstrap confidence intervals on RNA-seq expression from Kallisto
rnaseq limma edger deseq2 voom written 3.8 years ago by Sean Davis21k • updated 18 months ago by Paul Harrison70
10
votes
2
answers
2.2k
views
5 follow
2
answers
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