Showing: edgerreset
19
votes
2
answers
3.2k
views
11 follow
2
answers
16
votes
6
answers
3.3k
views
11 follow
6
answers
Diffbind: edgeR or DESeq2 ?
edger diffbind deseq2 medip-seq written 3.6 years ago by florian.noack60 • updated 23 months ago by Rory Stark2.8k
13
votes
5
answers
8.1k
views
10 follow
5
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RNA-Seq, generate batch-free count matrix
edger sva written 5.3 years ago by Brian Haas90 • updated 5.0 years ago by Gordon Smyth38k
3
votes
3
answers
444
views
10 follow
3
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13
votes
2
answers
2.4k
views
9 follow
2
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24
votes
3
answers
4.1k
views
9 follow
3
answers
12
votes
2
answers
1.8k
views
9 follow
2
answers
differential expression analysis of htseq data with edgeR/voom
limma edger voom htseq rnaseq123 written 2.4 years ago by wd30 • updated 9 months ago by Gordon Smyth38k
18
votes
2
answers
4.4k
views
8 follow
2
answers
Confidence intervals on edgeR logFC
edger statistics confidence interval written 5.1 years ago by ri.lars40 • updated 3.5 years ago by nwvidal0
13
votes
6
answers
8.8k
views
8 follow
6
answers
1
vote
1
answer
3.4k
views
7 follow
1
answer
limma-voom
rnaseq normalization limma edger written 5.7 years ago by Ming Yi350 • updated 5.7 years ago by Gordon Smyth38k
12
votes
1
answer
2.2k
views
7 follow
1
answer
edgeR glmLRT with test="F"?
edger differential expression dge written 4.4 years ago by Ryan C. Thompson7.4k • updated 4.4 years ago by Aaron Lun25k
12
votes
1
answer
1.1k
views
7 follow
1
answer
8
votes
2
answers
1.6k
views
7 follow
2
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0
votes
2
answers
1.2k
views
6 follow
2
answers
0
votes
1
answer
1.5k
views
6 follow
1
answer
total count filter cutoff
edger written 5.5 years ago by Guest User12k • updated 5.5 years ago by Wolfgang Huber13k
8
votes
2
answers
3.9k
views
6 follow
2
answers
Multi factor design edgeR/Deseq2
edger deseq2 rna-seq written 4.3 years ago by gthm20 • updated 4.3 years ago by Gordon Smyth38k
6
votes
3
answers
1.4k
views
6 follow
3
answers
edgeR vs glm.nb
edger glm written 4.2 years ago by dongamit12320
11
votes
4
answers
1.8k
views
6 follow
4
answers
15
votes
2
answers
1.3k
views
6 follow
2
answers
8
votes
2
answers
1.4k
views
6 follow
2
answers
Appropriate ways to filter counts data for voom/limma
sequencing limma edger written 3.2 years ago by blofeld10 • updated 3.2 years ago by Gordon Smyth38k
8
votes
1
answer
2.1k
views
6 follow
1
answer
7
votes
1
answer
254
views
6 follow
1
answer
6
votes
2
answers
230
views
6 follow
2
answers
goana and "No annotated genes found in universe" even with Entrez gene ids
edger goana written 12 weeks ago by matrs10 • updated 12 weeks ago by Gordon Smyth38k
0
votes
1
answer
883
views
5 follow
1
answer
Odd contrast; does it make statistical sense?
edger written 5.7 years ago by Ryan C. Thompson7.4k • updated 5.7 years ago by Gordon Smyth38k
14
votes
1
answer
4.1k
views
5 follow
1
answer
Differences between limma voom E values and edgeR cpm values?
edger written 5.4 years ago by John Brothers II60 • updated 5.0 years ago by Gordon Smyth38k
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