Showing: edgerreset
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removing genes before RNA-seq normalization
normalization edger deseq2 removing genes written 5 days ago by aec50 • updated 5 days ago by Gordon Smyth39k
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Nested Interaction in edgeR and composition bias
edger rna-seq written 18 days ago by chapdelainev0 • updated 14 days ago by Gordon Smyth39k
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Account for inter individual variability at the baseline using nested models
limma edger written 20 days ago by Zeel0 • updated 20 days ago by Gordon Smyth39k
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Very variable samples vs similar samples in the same dataset
edger deseq2 written 28 days ago by eduardogccm0 • updated 25 days ago by Michael Love26k
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log2FC calculation in EdgeR
edger log2fc written 25 days ago by matteo.buti0 • updated 25 days ago by James W. MacDonald51k
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"adding gene annotations" in edgeR doesn't work with select()
edger deg written 4 weeks ago by mjavad20120 • updated 4 weeks ago by James W. MacDonald51k
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edgeR time series analysis with no replicates
edger written 4.2 years ago by sirintra10 • updated 4 weeks ago by owuorerick0
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DESeq2 VS edgeR DEG results different in analysis same data
edger deseq2 written 6 weeks ago by 159580212900 • updated 6 weeks ago by Gordon Smyth39k
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Does edgeR need to specify reference group?
edger reference group written 6 weeks ago by 159580212900 • updated 6 weeks ago by Gordon Smyth39k
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Variation in the estimation of the common dispersion
edger common dispersion written 6 weeks ago by hz_670 • updated 6 weeks ago by Gordon Smyth39k
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Order of design matrix for edgeR analysis
edger R written 7 weeks ago by lornaas0 • updated 7 weeks ago by James W. MacDonald51k
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EdgeR - Complex design - contrasts/coefficients
edger glm written 8 weeks ago by D0 • updated 8 weeks ago by Yunshun Chen540
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110
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cpm filtering parameter
rnaseq edger transcriptomics cpm filtering metatranscriptomics written 9 weeks ago by vm.higareda0 • updated 9 weeks ago by Gordon Smyth39k
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is our edgeR code doing what we think it does?
edger differential expression rna-seq written 10 weeks ago by acs199010 • updated 10 weeks ago by Yunshun Chen540
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