Showing: edgerreset
5
votes
1
answer
1.2k
views
1
answer
non-integer counts for edgeR
edger written 7.2 years ago by Gordon Smyth38k
10
votes
1
answer
2.5k
views
5 follow
1
answer
Bootstrap confidence intervals on RNA-seq expression from Kallisto
rnaseq limma edger deseq2 voom written 4.2 years ago by Sean Davis21k • updated 23 months ago by Paul Harrison70
14
votes
1
answer
4.0k
views
5 follow
1
answer
Differences between limma voom E values and edgeR cpm values?
edger written 5.2 years ago by John Brothers II60 • updated 4.9 years ago by Gordon Smyth38k
18
votes
2
answers
4.3k
views
8 follow
2
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Confidence intervals on edgeR logFC
edger statistics confidence interval written 4.9 years ago by ri.lars40 • updated 3.4 years ago by nwvidal0
18
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2
answers
1.8k
views
2
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13
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2
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2.3k
views
9 follow
2
answers
16
votes
6
answers
3.2k
views
11 follow
6
answers
Diffbind: edgeR or DESeq2 ?
edger diffbind deseq2 medip-seq written 3.4 years ago by florian.noack60 • updated 21 months ago by Rory Stark2.8k
13
votes
5
answers
7.9k
views
10 follow
5
answers
RNA-Seq, generate batch-free count matrix
edger sva written 5.1 years ago by Brian Haas90 • updated 4.8 years ago by Gordon Smyth38k
11
votes
4
answers
1.7k
views
6 follow
4
answers
15
votes
2
answers
1.3k
views
6 follow
2
answers
7
votes
1
answer
1.1k
views
5 follow
1
answer
Using edgeR on pre-post treatment control design
edger complex-design written 4.9 years ago by lwc62820 • updated 4.9 years ago by James W. MacDonald50k
20
votes
2
answers
11k
views
5 follow
2
answers
6
votes
4
answers
1.7k
views
4
answers
design matrix for 4 groups in edgeR
edger design written 4.8 years ago by alakatos100
12
votes
1
answer
2.1k
views
7 follow
1
answer
edgeR glmLRT with test="F"?
edger differential expression dge written 4.2 years ago by Ryan C. Thompson7.3k • updated 4.2 years ago by Aaron Lun24k
8
votes
1
answer
805
views
1
answer
NaN results on some pathways in CAMERA
edger camera pathway analysis written 4.2 years ago by Ryan C. Thompson7.3k • updated 4.2 years ago by Gordon Smyth38k
10
votes
2
answers
2.4k
views
5 follow
2
answers
8
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1
answer
1.4k
views
5 follow
1
answer
4
votes
1
answer
873
views
1
answer
Using limma::roast/camera/romer etc from DESeq2
limma edger camera deseq2 romer written 4.0 years ago by phil.chapman140 • updated 4.0 years ago by Gordon Smyth38k
25
votes
2
answers
5.0k
views
2
answers
Normalization methodology in DESeq/DESeq2 vs edgeR
normalization edger deseq deseq2 written 3.8 years ago by Nik Tuzov70 • updated 3.8 years ago by Simon Anders3.6k
12
votes
3
answers
1.5k
views
5 follow
3
answers
17
votes
2
answers
3.1k
views
8 follow
2
answers
6
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2
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703
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2
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4
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5
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755
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5
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3
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1
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856
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1
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Hill in P-value distribution for heterogenous ChIP-seq samples
limma edger sva csaw qsmooth written 2.5 years ago by jma199130 • updated 2.5 years ago by Aaron Lun24k
12
votes
2
answers
1.6k
views
9 follow
2
answers
differential expression analysis of htseq data with edgeR/voom
limma edger voom htseq rnaseq123 written 2.2 years ago by wd30 • updated 7 months ago by Gordon Smyth38k
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