Showing: edgerreset
5
votes
1
answer
983
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non-integer counts for edgeR
edger written 6.7 years ago by Gordon Smyth36k
10
votes
1
answer
2.3k
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5 follow
1
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Bootstrap confidence intervals on RNA-seq expression from Kallisto
rnaseq limma edger deseq2 voom written 3.6 years ago by Sean Davis21k • updated 16 months ago by Paul Harrison70
14
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1
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3.5k
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1
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Differences between limma voom E values and edgeR cpm values?
edger written 4.6 years ago by John Brothers II60 • updated 4.3 years ago by Gordon Smyth36k
18
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2
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3.8k
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8 follow
2
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Confidence intervals on edgeR logFC
edger statistics confidence interval written 4.3 years ago by ri.lars40 • updated 2.8 years ago by nwvidal0
18
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2
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2
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13
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1.9k
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8 follow
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14
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6
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2.7k
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10 follow
6
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Diffbind: edgeR or DESeq2 ?
edger diffbind deseq2 medip-seq written 2.8 years ago by florian.noack60 • updated 14 months ago by Rory Stark2.7k
12
votes
5
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7.1k
views
9 follow
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RNA-Seq, generate batch-free count matrix
edger sva written 4.5 years ago by Brian Haas90 • updated 4.3 years ago by Gordon Smyth36k
11
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4
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1.4k
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6 follow
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15
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1.1k
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6 follow
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7
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1
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Using edgeR on pre-post treatment control design
edger complex-design written 4.3 years ago by lwc62820 • updated 4.3 years ago by James W. MacDonald49k
20
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10k
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6
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1.5k
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4
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12
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1
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1.7k
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7 follow
1
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edgeR glmLRT with test="F"?
edger differential expression dge written 3.6 years ago by Ryan C. Thompson7.1k • updated 3.6 years ago by Aaron Lun22k
8
votes
1
answer
721
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1
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NaN results on some pathways in CAMERA
edger camera pathway analysis written 3.6 years ago by Ryan C. Thompson7.1k • updated 3.6 years ago by Gordon Smyth36k
10
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2.1k
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5 follow
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8
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1.2k
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5 follow
1
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4
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745
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Using limma::roast/camera/romer etc from DESeq2
limma edger camera deseq2 romer written 3.4 years ago by phil.chapman140 • updated 3.4 years ago by Gordon Smyth36k
25
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2
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4.4k
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2
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Normalization methodology in DESeq/DESeq2 vs edgeR
normalization edger deseq deseq2 written 3.2 years ago by Nik Tuzov70 • updated 3.2 years ago by Simon Anders3.5k
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3
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6
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Hill in P-value distribution for heterogenous ChIP-seq samples
limma edger sva csaw qsmooth written 23 months ago by jma199130 • updated 23 months ago by Aaron Lun22k
10
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988
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3
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258
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Error in glmFit.default() : y is not a numeric matrix
edger written 4 months ago by borpano20 • updated 4 months ago by Aaron Lun22k
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