Showing: edgerreset
5
votes
1
answer
1.0k
views
1
answer
non-integer counts for edgeR
edger written 6.8 years ago by Gordon Smyth36k
10
votes
1
answer
2.4k
views
5 follow
1
answer
Bootstrap confidence intervals on RNA-seq expression from Kallisto
rnaseq limma edger deseq2 voom written 3.8 years ago by Sean Davis21k • updated 18 months ago by Paul Harrison70
14
votes
1
answer
3.7k
views
5 follow
1
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Differences between limma voom E values and edgeR cpm values?
edger written 4.8 years ago by John Brothers II60 • updated 4.5 years ago by Gordon Smyth36k
18
votes
2
answers
4.0k
views
8 follow
2
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Confidence intervals on edgeR logFC
edger statistics confidence interval written 4.5 years ago by ri.lars40 • updated 3.0 years ago by nwvidal0
18
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2
answers
1.6k
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2
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13
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2
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2.1k
views
8 follow
2
answers
16
votes
6
answers
2.9k
views
11 follow
6
answers
Diffbind: edgeR or DESeq2 ?
edger diffbind deseq2 medip-seq written 3.0 years ago by florian.noack60 • updated 16 months ago by Rory Stark2.7k
12
votes
5
answers
7.4k
views
9 follow
5
answers
RNA-Seq, generate batch-free count matrix
edger sva written 4.7 years ago by Brian Haas90 • updated 4.4 years ago by Gordon Smyth36k
11
votes
4
answers
1.5k
views
6 follow
4
answers
15
votes
2
answers
1.1k
views
6 follow
2
answers
7
votes
1
answer
1.1k
views
5 follow
1
answer
Using edgeR on pre-post treatment control design
edger complex-design written 4.4 years ago by lwc62820 • updated 4.4 years ago by James W. MacDonald49k
20
votes
2
answers
11k
views
5 follow
2
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6
votes
4
answers
1.6k
views
4
answers
12
votes
1
answer
1.8k
views
7 follow
1
answer
edgeR glmLRT with test="F"?
edger differential expression dge written 3.8 years ago by Ryan C. Thompson7.2k • updated 3.8 years ago by Aaron Lun23k
8
votes
1
answer
747
views
1
answer
NaN results on some pathways in CAMERA
edger camera pathway analysis written 3.8 years ago by Ryan C. Thompson7.2k • updated 3.8 years ago by Gordon Smyth36k
10
votes
2
answers
2.2k
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5 follow
2
answers
8
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1
answer
1.3k
views
5 follow
1
answer
4
votes
1
answer
779
views
1
answer
Using limma::roast/camera/romer etc from DESeq2
limma edger camera deseq2 romer written 3.6 years ago by phil.chapman140 • updated 3.6 years ago by Gordon Smyth36k
25
votes
2
answers
4.6k
views
2
answers
Normalization methodology in DESeq/DESeq2 vs edgeR
normalization edger deseq deseq2 written 3.3 years ago by Nik Tuzov70 • updated 3.3 years ago by Simon Anders3.5k
12
votes
3
answers
1.4k
views
5 follow
3
answers
16
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2
answers
2.8k
views
8 follow
2
answers
6
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2
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629
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2
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4
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678
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5
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3
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1
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785
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1
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Hill in P-value distribution for heterogenous ChIP-seq samples
limma edger sva csaw qsmooth written 2.1 years ago by jma199130 • updated 2.1 years ago by Aaron Lun23k
10
votes
2
answers
1.1k
views
2
answers
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