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0
votes
1
answer
102
views
1
answer
Anyone else having trouble with biomaRt (Oct 10, 2019)
biomart ensembl written 8 weeks ago by swbarnes2 • 340 • updated 8 weeks ago by Mike Smith • 4.0k
0
votes
1
answer
119
views
1
answer
BioMart does not find mouse homologs of human genes
biomart ensembl homolog ortholog gene conversion written 8 weeks ago by atakanekiz • 30 • updated 8 weeks ago by James W. MacDonald ♦ 52k
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99
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0
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News: Ensembl 98 has been released and renaming of species
biomart news ensembl mart e98 written 10 weeks ago by Thomas Maurel • 770
0
votes
1
answer
108
views
1
answer
Eliminate redundancy in biomaRt (2.38.0) query
biomart ensembl written 4 months ago by olibee1315 • 0 • updated 4 months ago by Mike Smith • 4.0k
0
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0
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142
views
0
answers
external_gene_id attribute removed from new biomaRt version
biomart ensembl ensemblplants written 4 months ago by Didi • 10
1
vote
0
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150
views
0
answers
News: ensembldb EnsDb databases for Ensembl release 97 added to AnnotationHub
annotation news ensembl ensembldb written 5 months ago by Johannes Rainer • 1.5k
1
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0
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149
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0
answers
News: Ensembl 97 has been released
biomart news ensembl e97 written 5 months ago by James Allen • 10
10
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0
answers
262
views
0
answers
Best alternative annotation package to BiomaRt
rnaseq biomart R ensembl written 5 months ago by m93 • 10
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0
answers
141
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0
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The query to the BioMart webservice returned an invalid result: biomaRt expected a character string
biomart R ensembl bioconductor written 5 months ago by lbuo • 0
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votes
1
answer
206
views
1
answer
Error message: "Request to BioMart web service failed."
biomart ensembl biocmanager listmarts() written 5 months ago by ktd2918 • 0 • updated 5 months ago by Mike Smith • 4.0k
3
votes
1
answer
129
views
1
answer
GEO Download - "The query to BioMart webservice returned an invalid result..."
biomart software error ensembl geo written 6 months ago by wes • 10 • updated 6 months ago by Mike Smith • 4.0k
1
vote
1
answer
120
views
1
answer
Gene biotype for a given symbol
ensembl written 6 months ago by adai • 0 • updated 6 months ago by Johannes Rainer • 1.5k
1
vote
1
answer
290
views
1
answer
Scan error using biomart getBM with version option and host set
biomart ensembl getbm written 6 months ago by Marc Saric • 70
2
votes
1
answer
175
views
1
answer
News: ensembl 96 gtfs and fasta twobits have been added to AnnotationHub
annotationdata annotationhub news ensembl gtf 2bit written 7 months ago by shepherl ♦♦ 1.7k • updated 7 months ago by nguyenlieuduoc • 0
6
votes
1
answer
441
views
1
answer
biomaRt Ensembl gene ID to multiple HGNC symbol
biomart ensembl symbol hgnc written 7 months ago by foehn • 60 • updated 7 months ago by James W. MacDonald ♦ 52k
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0
answers
175
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0
answers
News: Ensembl 96 has been released
biomart news ensembl e96 written 8 months ago by amonida • 20
4
votes
1
answer
261
views
1
answer
Getting CDSCHROM values from ENSEMBL/SYMBOL keys using mapIds from TxDb.Hsapiens.UCSC.hg19.knownGene
annotationdbi ensembl org.hs.eg.db singlecellexperiment cdschrom written 8 months ago by kushshah • 10 • updated 8 months ago by James W. MacDonald ♦ 52k
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200
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News: ensembl 95 gtfs and fasta twobits have been added to AnnotationHub
annotationdata annotationhub news ensembl gtf 2bit written 9 months ago by shepherl ♦♦ 1.7k
0
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0
answers
312
views
0
answers
News: Ensembl 95 has been released
biomart news ensembl e95 written 11 months ago by Thomas Maurel • 770
2
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0
answers
236
views
0
answers
make TxDb from list of genes
R ensembl rstudio maketxdbfrombiomart maketxdbfromgranges written 12 months ago by rtwest • 0
1
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1
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284
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1
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Ensemble and Entrez disconnected?
biomart ensembl org.hs.eg.db entrez written 12 months ago by bettina.budeus • 0 • updated 12 months ago by James W. MacDonald ♦ 52k
0
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1
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255
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1
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Pick coding vs non-coding from Ensembl data set
R ensembl protein coding noncoding rna ensembldb written 12 months ago by jdmentze • 0 • updated 12 months ago by Johannes Rainer • 1.5k
3
votes
2
answers
342
views
2
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biomaRt: Ensembl -> Entrez conversion error?
biomart ensembl entrez gene identifiers conversion written 12 months ago by EdgeR_A_Poe • 10 • updated 12 months ago by Mike Smith • 4.0k
0
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1
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295
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1
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DESeq2: removal of duplicated genes during statistical analysis
deseq2 ensembl gene symbol written 12 months ago by tkapell • 10 • updated 12 months ago by Michael Love ♦ 26k
5
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1
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420
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1
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Ensembl plants at annotationHub?
arabidopsis thaliana annotationhub ensembl ensembldb plant written 12 months ago by Guido Hooiveld • 2.5k • updated 12 months ago by Johannes Rainer • 1.5k
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