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115
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Ask for help on the preprocessing of GEO microarray data with Oligo and affy package
affy oligo frma rma written 23 days ago by chziy429 • 0 • updated 22 days ago by James W. MacDonald ♦ 52k
4
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342
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fRMA results different for Windows and Linux
affy frma gene expression data expr written 19 months ago by osieman52 • 0 • updated 19 months ago by James W. MacDonald ♦ 52k
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1
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263
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1
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HG-U219 vectors for fRMA?
frma frmatools written 19 months ago by skol • 0 • updated 19 months ago by Matthew McCall • 830
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3
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722
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3
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hgu133plus2hsentrezgcdf or hgu133ahsentrezgcdf packages not installing
hgu133a affy frma readaffy package installation written 20 months ago by Chris Mancuso • 0
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2
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537
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How to normalize mouse gene 1.0st arry using frma?
microarray frma written 2.5 years ago by aritra • 0 • updated 21 months ago by emacreamoinn • 0
3
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1
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471
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Processing several GSM from GEO database using Barcode and fRMA
geneexpression frma barcode ncbi geo gsm written 2.1 years ago by diana.elassal • 0 • updated 2.1 years ago by Matthew McCall • 830
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453
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1
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fRMA normalization for Mouse Gene 2.1 ST Array
frma affymetrix mouse gene arrays written 2.5 years ago by arisarkar88 • 0 • updated 2.5 years ago by Matthew McCall • 830
3
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1
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659
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1
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About the best use of frma for several GEO Series
normalization preprocessing frma written 3.0 years ago by ctruntzer • 10 • updated 3.0 years ago by Matthew McCall • 830
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1
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473
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Summarization probe ID to gene : FRMA
affy frma summarization written 3.1 years ago by Shamim Sarhadi • 20 • updated 3.1 years ago by James W. MacDonald ♦ 52k
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2
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781
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2
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fRMA error - unable to create unique mapping
affy frma frmatools written 3.2 years ago by yesitsjess • 0 • updated 3.2 years ago by Matthew McCall • 830
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592
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In the frmaTools package, how can I makeVectorsFeatureSet() output include probeVecCore like the pre-built vectors?
frma frmatools affymetrix microarrays written 3.7 years ago by jperezrogers • 0
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2
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fRMA: Applying mouse4302frmavecs on HT_MG-430_PM Arrays
microarray frma affiymetrix written 3.9 years ago by Matthias Z. • 20
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647
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frma: "mogene.2.0.stfrmavecs" availability?? - Gene Barcode 3.0
frma affymetrix barcode written 3.9 years ago by minnie • 0 • updated 3.9 years ago by Matthew McCall • 830
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3.4k
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How to use brainarray custom cdf with oligo package?
customcdf oligo frma hta written 4.2 years ago by sanj • 20 • updated 4.2 years ago by James W. MacDonald ♦ 52k
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3
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737
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3
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Problem with frma median_polish
frma software error written 4.2 years ago by Thomas Pfau • 20 • updated 4.2 years ago by Matthew McCall • 830
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1
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829
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Appropriate merge of batches of the same array to create a final total ExpressionSet
batcheffect frma insilicomerging bioconductor primeview written 4.6 years ago by svlachavas • 740 • updated 4.6 years ago by Matthew McCall • 830
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722
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1
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Strategies for fRMA on custom dataset(s)?
frma frmatools written 4.8 years ago by Ryan C. Thompson ♦ 7.4k • updated 4.8 years ago by Matthew McCall • 830
2
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frma vectors for GPL13158 (Affymetrix HT HG-U133+ PM Array Plate)?
frma frmatools written 4.8 years ago by Ryan C. Thompson ♦ 7.4k • updated 4.8 years ago by Matthew McCall • 830
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598
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1
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How many arrays are "enough" for creating useful fRMA vectors?
annotation frma frmatools written 5.0 years ago by Tim Triche • 4.2k • updated 5.0 years ago by Matthew McCall • 830
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2
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857
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barcode support for other platforms
frma written 5.2 years ago by Guest User • 12k • updated 5.2 years ago by Matthew McCall • 830
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1
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912
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1
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Single sample normalization of single-channel Agilent microarrays
affy frma scan.upc written 5.3 years ago by Guest User • 12k • updated 5.3 years ago by Ryan C. Thompson ♦ 7.4k
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5
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1.1k
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5
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frma and alternative CDFs
go cdf frma brain written 5.4 years ago by Guest User • 12k • updated 5.4 years ago by Matthew McCall • 830
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processing Illumina HT12v4.0 expression data from GEO
normalization affy process geoquery frma written 5.4 years ago by Abhishek Pratap • 170 • updated 5.4 years ago by Sean Davis ♦ 21k
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R hthgu133afrmavecs_1.1.0 error: row.effects should sum to zero
go probe process frma written 5.4 years ago by Matthew McCall • 830
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1.7k
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converting probeset id to gene id's : fRMA
probe affy convert frma written 5.5 years ago by Abhishek Pratap • 170 • updated 5.5 years ago by Peter Langfelder • 2.3k
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