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3
votes
3
answers
613
views
3
answers
Annotation Extension for GO terms
gene ontology rols written 4.1 years ago by Michele • 90 • updated 4.1 years ago by Marc Carlson • 7.2k
2
votes
2
answers
812
views
2
answers
GO offspring consistency
annotation go graph gene ontology written 3.9 years ago by jelle.goeman • 0 • updated 3.9 years ago by Laurent Gatto ♦ 1.0k
0
votes
5
answers
1.6k
views
5
answers
expired SQLiteConnection in GoSemSim package.
gosemsim gene ontology written 3.5 years ago by anupambtech2007 • 0 • updated 3.2 years ago by Paulson, Ariel • 10
0
votes
1
answer
698
views
1
answer
GOterm semantic similarity with non-reference organism
go gosemsim gene ontology written 3.5 years ago by cpcantalapiedra • 0
2
votes
10
answers
780
views
10
answers
I want to order genes in GO groups
genefilter gene ontology written 3.1 years ago by kanacska • 10 • updated 3.1 years ago by b.nota • 300
0
votes
0
answers
502
views
0
answers
read tree fails for large trees
ramigo gene ontology R igraph written 2.7 years ago by bkellman • 0
0
votes
0
answers
406
views
0
answers
mouse4302.db mapping discrepancies between as.list() and select()
mouse4302 gene ontology R written 2.6 years ago by mark614 • 0
0
votes
0
answers
860
views
0
answers
Goseq package in R:getting terms after using getgo
gene ontology R bioconductor written 2.6 years ago by javier.mendoza • 0
1
vote
1
answer
756
views
1
answer
How to get genes corresponding to a GO term from topGOData object?
microarray topgo gene ontology R written 2.6 years ago by rishi.dasroy • 10 • updated 15 months ago by mt1022 • 0
0
votes
0
answers
488
views
0
answers
Create list of genes within each GOslim term
gene ontology goslim enrichment analysis gene annotation written 2.5 years ago by mirko • 0
0
votes
1
answer
1.1k
views
1
answer
Gene ontology and pathway analysis in R - replicate ToppGene features; best strategy for getting annotations?
biomart topgo gene ontology pathway analysis goexpress written 2.4 years ago by Darya Vanichkina • 100 • updated 2.4 years ago by kevin.rue • 220
1
vote
1
answer
425
views
1
answer
Gene Ontology Overrepresentation Analysis with a custom level of Abstraction of GO Terminology
go gostats gene ontology missmethyl overrepresentation analysis written 2.2 years ago by graggsd • 0 • updated 2.2 years ago by James W. MacDonald ♦ 48k
1
vote
0
answers
350
views
0
answers
GoStats ontology count number does not match genes associated with GO term
gene ontology gostat go terms written 2.1 years ago by adamgetzler • 0
1
vote
3
answers
541
views
3
answers
Gene Ontology and Gene Set Enrichment
go gene ontology bioinformatics rna-seq gene set enrichment written 2.0 years ago by fromhj304 • 10 • updated 2.0 years ago by Guangchuang Yu • 1.0k
1
vote
1
answer
639
views
5 follow
1
answer
topGO for Gene Ontology and Gene Set enrichment
topgo gene ontology bioinformatics rna-seq gene set enrichment written 2.0 years ago by fromhj304 • 10 • updated 21 months ago by Lluís Revilla Sancho • 400
0
votes
2
answers
428
views
2
answers
piano runGSA with input from DESEQ2
deseq2 gene ontology piano written 23 months ago by simonp.snoeck • 0
1
vote
1
answer
865
views
1
answer
Using GOsemsim to calculate semantic similarity between orthologus genes of two species
gosemsim gene ontology semantic similarity across species written 22 months ago by saadmurtazakhan • 10 • updated 22 months ago by Guangchuang Yu • 1.0k
5
votes
2
answers
390
views
2
answers
Contrasts in GOexpress analysis?
gene ontology goexpress written 21 months ago by mforde84 • 10 • updated 21 months ago by kevin.rue • 220
1
vote
1
answer
351
views
1
answer
Correct for Gene Length bias in GO analysis of retrotransposition
go gene ontology bias retrotransposition written 19 months ago by mujupas • 0 • updated 19 months ago by Gordon Smyth ♦ 35k
3
votes
2
answers
524
views
2
answers
How does the org.Dm.eg.db package deal with NOT annotation qualifiers when annotating genes to GO?
annotation gene ontology org.dm.eg.db go enrichment not written 19 months ago by ivozeller • 0 • updated 19 months ago by Valerie Obenchain ♦♦ 6.6k
1
vote
2
answers
1.1k
views
2
answers
topGO gene names/ensembl IDs
biomart topgo deseq2 gene ontology written 17 months ago by krc3004 • 10 • updated 17 months ago by Lluís Revilla Sancho • 400
0
votes
1
answer
505
views
1
answer
Getting Differentially Expressed Genes from GOSeq Categories
annotate biomart category goseq gene ontology written 16 months ago by krc3004 • 10 • updated 15 months ago by b.nota • 300
1
vote
1
answer
293
views
1
answer
Returning gene functional annotations with gene symbols as input (using mygene Bioconductor package)
gene ontology software error R mygene written 15 months ago by Bohdan Khomtchouk • 10 • updated 15 months ago by James W. MacDonald ♦ 48k
3
votes
2
answers
385
views
2
answers
Does DEseq2 analysis make GOseq redundant?
goseq deseq2 gene ontology differential gene expression written 15 months ago by david.rinker • 10
0
votes
0
answers
541
views
0
answers
News: Interested in developing a new gene set enrichment tool ?
gene ontology news gene set analysis gene set enrichment go analysis written 14 months ago by ivozeller • 0 • updated 14 months ago by Martin Morgan ♦♦ 22k
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