Showing: gene set testing • reset
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Focused gene set tests
gene set analysis gene set testing gene set enrichment analysis written 8 months ago by SB • 0
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Perform limma based gene-set testing for a two-group comparison in a microarray dataset regarding specific biological processes
limma mroast gene set testing agilent microarrays fry gene tests written 10 months ago by svlachavas • 690 • updated 10 months ago by Gordon Smyth ♦ 38k
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Pre-ranked camera gene set testing with edgeR results
limma edger camera gene set testing camerapr written 11 months ago by jamie.gearing • 40 • updated 11 months ago by Gordon Smyth ♦ 38k
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Do the gene set statistics of the ROAST paper correspond to those implemented in the .roastEffects R function?
limma statistics roast source code gene set testing written 12 months ago by Andrea Carenzo • 0
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GAGE function and the same.dir option
gage gene set testing written 15 months ago by Aurora • 10 • updated 14 months ago by Luo Weijun • 1.5k
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EGSEA usage with microarray data (with vooma)?
gsea gene set testing limma voom egsea vooma written 2.6 years ago by Pekka Kohonen • 190
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Gene set Testing with Limma for Agilent IDs probes?
annotation limma gene set testing agilent microarrays written 2.6 years ago by amalbouzid.ing • 0
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Test whether expression levels of two gene sets are significantly different
deseq2 R gene set testing gene expression written 2.8 years ago by Jon Bråte • 160
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639
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5 follow
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Competitive gene set testing between two sets of genes
edger camera gene set testing written 3.1 years ago by le2336 • 20 • updated 3.1 years ago by Gordon Smyth ♦ 38k
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Gene Set Testing or GSEA for functional annotation of co-expressed ncRNA and coding genes
gene set analysis gsea ncrna gene set testing coexpression written 3.3 years ago by m.fletcher • 20
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Confused by results from CAMERA gene set testing
limma camera gene set testing written 3.3 years ago by claire.n.levy • 10
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Interpretation of mroast gene set analysis in R and appropriate use of the function barcode plot regarding a microarray dataset
limma kegg mroast gene set testing barcodeplot written 3.7 years ago by svlachavas • 690 • updated 3.7 years ago by Gordon Smyth ♦ 38k
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Possible implementation of roast/mroast for testing common DE patterns across two different experiments
bioconductor roast differential gene expression mroast gene set testing written 4.3 years ago by svlachavas • 690
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