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6
votes
1
answer
46
views
5 follow
1
answer
Pre-ranked camera gene set testing with edgeR results
limma edger camera gene set testing camerapr written 10 days ago by jamie.gearing • 40 • updated 9 days ago by Gordon Smyth ♦ 35k
1
vote
1
answer
144
views
1
answer
Do the gene set statistics of the ROAST paper correspond to those implemented in the .roastEffects R function?
limma statistics roast source code gene set testing written 29 days ago by Andrea Carenzo • 0
0
votes
1
answer
111
views
1
answer
GAGE function and the same.dir option
gage gene set testing written 4 months ago by Aurora • 10 • updated 3 months ago by Luo Weijun • 1.4k
2
votes
1
answer
460
views
1
answer
EGSEA usage with microarray data (with vooma)?
gsea gene set testing limma voom egsea vooma written 20 months ago by Pekka Kohonen • 190
4
votes
2
answers
636
views
2
answers
Gene set Testing with Limma for Agilent IDs probes?
annotation limma gene set testing agilent microarrays written 20 months ago by amalbouzid.ing • 0
7
votes
4
answers
523
views
4
answers
Test whether expression levels of two gene sets are significantly different
deseq2 R gene set testing gene expression written 22 months ago by Jon Bråte • 150
1
vote
1
answer
479
views
1
answer
Competitive gene set testing between two sets of genes
edger camera gene set testing written 2.2 years ago by le2336 • 10 • updated 2.2 years ago by Gordon Smyth ♦ 35k
1
vote
0
answers
493
views
0
answers
Gene Set Testing or GSEA for functional annotation of co-expressed ncRNA and coding genes
gene set analysis gsea ncrna gene set testing coexpression written 2.4 years ago by m.fletcher • 10
1
vote
1
answer
571
views
1
answer
Confused by results from CAMERA gene set testing
limma camera gene set testing written 2.4 years ago by claire.n.levy • 10
4
votes
1
answer
1.3k
views
1
answer
Interpretation of mroast gene set analysis in R and appropriate use of the function barcode plot regarding a microarray dataset
limma kegg mroast gene set testing barcodeplot written 2.8 years ago by svlachavas • 610 • updated 2.8 years ago by Gordon Smyth ♦ 35k
6
votes
2
answers
800
views
2
answers
Possible implementation of roast/mroast for testing common DE patterns across two different experiments
bioconductor roast differential gene expression mroast gene set testing written 3.4 years ago by svlachavas • 610
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