0
votes
1
answer
528
views
1
answer
Working with non-type strain annotation
proteomics go genomes written 5.4 years ago by Thomas Lin Pedersen70 • updated 5.4 years ago by Marc Carlson7.2k
0
votes
2
answers
1.3k
views
2
answers
QuasR: how to use an indexed reference genome?
bsgenome genomes quasr written 5.4 years ago by Paul Shannon740 • updated 5.4 years ago by Michael Stadler320
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votes
1
answer
667
views
1
answer
QuasR special case alignment
alignment genomes quasr written 5.5 years ago by Michael Stadler320 • updated 5.4 years ago by Ugo Borello340
0
votes
1
answer
462
views
1
answer
coverage on very large ReadGappedAlignmentsObject
coverage genomes written 5.4 years ago by Stefanie350 • updated 5.4 years ago by Martin Morgan ♦♦ 22k
0
votes
1
answer
923
views
1
answer
Help needed! What wrong with VariantAnnotation and TCGA vcfs
variantannotation genomes written 5.5 years ago by ying chen340 • updated 5.5 years ago by Martin Morgan ♦♦ 22k
0
votes
0
answers
683
views
0
answers
0
votes
0
answers
772
views
0
answers
0
votes
0
answers
553
views
0
answers
3
votes
1
answer
397
views
1
answer
Limit on number of sequence files for forging a BSgenome
bsgenome genomes written 5.6 years ago by Marco Blanchette210 • updated 5.6 years ago by Kasper Daniel Hansen6.4k
0
votes
2
answers
325
views
2
answers
Expected value of finding a sequence (Tim Smith)
genomes written 5.6 years ago by Alvaro J. González80 • updated 5.6 years ago by Alvaro J. González10
0
votes
0
answers
567
views
0
answers
0
votes
0
answers
567
views
0
answers
0
votes
1
answer
482
views
1
answer
0
votes
2
answers
913
views
2
answers
seqlevels in VCF objects
bsgenome genomes written 5.8 years ago by Murat Tasan70 • updated 5.8 years ago by Valerie Obenchain ♦♦ 6.6k
0
votes
1
answer
395
views
1
answer
Granges averaging
genomes written 6.0 years ago by Yannick Wurm30 • updated 6.0 years ago by Hervé Pagès ♦♦ 13k
0
votes
1
answer
757
views
1
answer
VariantAnnotation: readVcf on nonmodel organism
organism genomes written 6.1 years ago by Yannick Wurm30 • updated 6.1 years ago by Valerie Obenchain ♦♦ 6.6k
0
votes
2
answers
620
views
2
answers
Building custom genome in MeDIPS
bsgenome genomes medips written 6.1 years ago by Yan He10 • updated 6.1 years ago by James W. MacDonald48k
0
votes
0
answers
326
views
0
answers
regarding mapping package
cancer genomes rsubread gmapr written 6.1 years ago by Martin Morgan ♦♦ 22k
0
votes
1
answer
394
views
1
answer
How to use cutome reference genome?
bsgenome genomes medips written 6.1 years ago by Guest User12k • updated 6.1 years ago by Kasper Daniel Hansen6.4k
0
votes
0
answers
577
views
0
answers
0
votes
1
answer
739
views
1
answer
Contrast Problem
genomes written 6.3 years ago by Aditi Rambani50 • updated 6.3 years ago by Gordon Smyth35k
0
votes
1
answer
556
views
1
answer
How can I obtain gene name from chromosome location?
lung charm genomes written 6.3 years ago by Yoo, Seungyeul110 • updated 6.3 years ago by Steve Lianoglou12k
0
votes
1
answer
688
views
1
answer
0
votes
0
answers
575
views
0
answers
0
votes
1
answer
387
views
1
answer
Finding coding SNPs with predictCoding
snp annotation bsgenome genomicfeatures cycle genomes written 6.4 years ago by Valerie Obenchain ♦♦ 6.6k • updated 6.4 years ago by Thomas Girke1.6k
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