0
votes
1
answer
611
views
7 follow
1
answer
more stupid *Ranges questions...
transcription chippeakanno genomicranges written 6.3 years ago by Tim Triche4.2k • updated 6.3 years ago by Michael Lawrence9.8k
9
votes
1
answer
862
views
7 follow
1
answer
looping through a GRangesList object
genomicranges grangeslist written 24 months ago by Simon Anders3.4k • updated 24 months ago by Julian Gehring1.3k
4
votes
4
answers
930
views
6 follow
4
answers
tileGenome for overlapping ranges?
genomicranges written 2.9 years ago by Janet Young730 • updated 2.4 years ago by biocyberman0
0
votes
2
answers
451
views
5 follow
2
answers
good news and bad news
infrastructure cancer iranges genomicranges written 5.4 years ago by Hervé Pagès ♦♦ 13k • updated 5.4 years ago by Steve Lianoglou12k
8
votes
3
answers
3.8k
views
5 follow
3
answers
9
votes
0
answers
2.4k
views
5 follow
0
answers
6
votes
2
answers
195
views
5 follow
2
answers
0
votes
1
answer
387
views
1
answer
Calculate Outer Positions of GappedAlignmentPairs
coverage genomicranges written 4.8 years ago by Dario Strbenac1.4k • updated 4.8 years ago by Michael Lawrence9.8k
0
votes
2
answers
827
views
2
answers
using a gtf file to map reads
genomicranges deseq2 written 4.6 years ago by Sam McInturf300 • updated 4.6 years ago by Michael Lawrence9.8k
9
votes
3
answers
4.7k
views
3
answers
How to properly sort GRanges?
genomicranges granges seqnames sort order written 3.2 years ago by enricoferrero560 • updated 2.8 years ago by yinghua20
3
votes
1
answer
1.0k
views
1
answer
6
votes
1
answer
1.3k
views
1
answer
Intergenic coordinates with Genomic Feaures
iranges genomicfeatures genomicranges written 2.8 years ago by cookie20 • updated 2.8 years ago by Mike Smith2.2k
4
votes
1
answer
423
views
1
answer
Select from Overlapping Genomic Ranges based on Score or other Metadata
genomicranges written 23 months ago by IV20 • updated 23 months ago by Michael Lawrence9.8k
8
votes
2
answers
305
views
2
answers
Counting ambiguously mapped reads per feature
rnaseq genomicranges rsamtools genomicalignments bam written 18 months ago by rubi80 • updated 18 months ago by Gordon Smyth32k
3
votes
1
answer
336
views
1
answer
Extract coordinates of overlapping genomic intervals
genomicranges findoverlaps intersect written 17 months ago by rubi80 • updated 17 months ago by Steve Lianoglou12k
0
votes
1
answer
414
views
1
answer
Using GenomicRanges with table data
iranges genomicranges written 5.0 years ago by Tom Oates60 • updated 5.0 years ago by Steve Lianoglou12k
0
votes
1
answer
422
views
1
answer
ReportingTools - trouble incorporating annotations
annotation edger genomicranges written 4.6 years ago by Sam McInturf300 • updated 4.6 years ago by James W. MacDonald45k
0
votes
1
answer
711
views
1
answer
1
vote
1
answer
424
views
1
answer
4
votes
2
answers
2.6k
views
2
answers
Merge multiple genomic intervals if overlapping more than xx percents
genomicranges written 2.7 years ago by samuel collombet110 • updated 2.6 years ago by Hervé Pagès ♦♦ 13k
0
votes
3
answers
1.1k
views
3
answers
3
votes
2
answers
1.9k
views
2
answers
8
votes
2
answers
3.0k
views
2
answers
annotate GRanges with upstream or downstream nearest gene
genomicfeatures genomicranges grange written 2.0 years ago by tangming200590 • updated 2.0 years ago by Ou, Jianhong1.0k
7
votes
1
answer
2.3k
views
1
answer
How do I merge a list of GRanges?
genomicranges written 19 months ago by endrebak8520 • updated 19 months ago by Hervé Pagès ♦♦ 13k
5
votes
2
answers
327
views
2
answers
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