0
votes
1
answer
855
views
7 follow
1
answer
more stupid *Ranges questions...
transcription chippeakanno genomicranges written 7.1 years ago by Tim Triche4.2k • updated 7.1 years ago by Michael Lawrence10k
9
votes
1
answer
1.5k
views
7 follow
1
answer
looping through a GRangesList object
genomicranges grangeslist written 2.7 years ago by Simon Anders3.5k • updated 2.7 years ago by Julian Gehring1.3k
4
votes
4
answers
1.1k
views
6 follow
4
answers
tileGenome for overlapping ranges?
genomicranges written 3.7 years ago by Janet Young730 • updated 3.2 years ago by biocyberman0
0
votes
2
answers
607
views
5 follow
2
answers
good news and bad news
infrastructure cancer iranges genomicranges written 6.2 years ago by Hervé Pagès ♦♦ 13k • updated 6.2 years ago by Steve Lianoglou12k
8
votes
3
answers
4.1k
views
5 follow
3
answers
9
votes
0
answers
2.9k
views
5 follow
0
answers
6
votes
2
answers
375
views
5 follow
2
answers
0
votes
1
answer
494
views
1
answer
Calculate Outer Positions of GappedAlignmentPairs
coverage genomicranges written 5.6 years ago by Dario Strbenac1.4k • updated 5.6 years ago by Michael Lawrence10k
0
votes
2
answers
1.0k
views
2
answers
using a gtf file to map reads
genomicranges deseq2 written 5.4 years ago by Sam McInturf300 • updated 5.4 years ago by Michael Lawrence10k
10
votes
3
answers
6.7k
views
3
answers
How to properly sort GRanges?
genomicranges granges seqnames sort order written 3.9 years ago by enricoferrero570 • updated 3.5 years ago by yinghua30
3
votes
1
answer
1.2k
views
1
answer
6
votes
1
answer
1.8k
views
1
answer
Intergenic coordinates with Genomic Feaures
iranges genomicfeatures genomicranges written 3.6 years ago by cookie20 • updated 3.6 years ago by Mike Smith2.9k
4
votes
1
answer
574
views
1
answer
Select from Overlapping Genomic Ranges based on Score or other Metadata
genomicranges written 2.6 years ago by IV20 • updated 2.6 years ago by Michael Lawrence10k
8
votes
2
answers
414
views
2
answers
Counting ambiguously mapped reads per feature
rnaseq genomicranges rsamtools genomicalignments bam written 2.2 years ago by rubi90 • updated 2.2 years ago by Gordon Smyth35k
3
votes
1
answer
494
views
1
answer
Extract coordinates of overlapping genomic intervals
genomicranges findoverlaps intersect written 2.2 years ago by rubi90 • updated 2.2 years ago by Steve Lianoglou12k
0
votes
1
answer
512
views
1
answer
Using GenomicRanges with table data
iranges genomicranges written 5.8 years ago by Tom Oates60 • updated 5.8 years ago by Steve Lianoglou12k
0
votes
1
answer
511
views
1
answer
ReportingTools - trouble incorporating annotations
annotation edger genomicranges written 5.3 years ago by Sam McInturf300 • updated 5.3 years ago by James W. MacDonald48k
0
votes
1
answer
885
views
1
answer
1
vote
1
answer
471
views
1
answer
4
votes
2
answers
3.7k
views
2
answers
Merge multiple genomic intervals if overlapping more than xx percents
genomicranges written 3.4 years ago by samuel collombet120 • updated 3.4 years ago by Hervé Pagès ♦♦ 13k
0
votes
3
answers
1.3k
views
3
answers
3
votes
2
answers
2.8k
views
2
answers
8
votes
2
answers
4.6k
views
2
answers
annotate GRanges with upstream or downstream nearest gene
genomicfeatures genomicranges grange written 2.8 years ago by tangming200590 • updated 2.8 years ago by Ou, Jianhong1.1k
8
votes
1
answer
2.7k
views
1
answer
10
votes
1
answer
4.8k
views
1
answer
How do I merge a list of GRanges?
genomicranges written 2.3 years ago by endrebak8530 • updated 2.3 years ago by Hervé Pagès ♦♦ 13k
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