Showing: genomicrangesreset
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more stupid *Ranges questions...
transcription chippeakanno genomicranges written 8.2 years ago by Tim Triche4.2k • updated 8.2 years ago by Michael Lawrence11k
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looping through a GRangesList object
genomicranges grangeslist written 3.8 years ago by Simon Anders3.6k • updated 3.8 years ago by Julian Gehring1.3k
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tileGenome for overlapping ranges?
genomicranges written 4.8 years ago by Janet Young740 • updated 4.2 years ago by biocyberman0
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good news and bad news
infrastructure cancer iranges genomicranges written 7.2 years ago by Hervé Pagès ♦♦ 14k • updated 7.2 years ago by Steve Lianoglou12k
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annotate GRanges with upstream or downstream nearest gene
genomicfeatures genomicranges grange written 3.9 years ago by tangming2005150 • updated 3.9 years ago by Ou, Jianhong1.2k
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setdiff for GenomicRanges
genomicranges written 3.2 years ago by Benilton Carvalho4.3k • updated 3.2 years ago by Michael Lawrence11k
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Calculate Outer Positions of GappedAlignmentPairs
coverage genomicranges written 6.7 years ago by Dario Strbenac1.5k • updated 6.7 years ago by Michael Lawrence11k
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using a gtf file to map reads
genomicranges deseq2 written 6.4 years ago by Sam McInturf300 • updated 6.4 years ago by Michael Lawrence11k
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How to properly sort GRanges?
genomicranges granges seqnames sort order written 5.0 years ago by enricoferrero570 • updated 4.6 years ago by yinghua30
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Intergenic coordinates with Genomic Feaures
iranges genomicfeatures genomicranges written 4.6 years ago by cookie20 • updated 4.6 years ago by Mike Smith4.0k
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Select from Overlapping Genomic Ranges based on Score or other Metadata
genomicranges written 3.7 years ago by IV30 • updated 3.7 years ago by Michael Lawrence11k
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Counting ambiguously mapped reads per feature
rnaseq genomicranges rsamtools genomicalignments bam written 3.3 years ago by rubi90 • updated 3.3 years ago by Gordon Smyth39k
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Extract coordinates of overlapping genomic intervals
genomicranges findoverlaps intersect written 3.3 years ago by rubi90 • updated 3.3 years ago by Steve Lianoglou12k
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summarize scores of GRanges into bins
genomicranges grangeslist findoverlaps bin written 2.2 years ago by Assa Yeroslaviz1.4k • updated 12 months ago by Jenny HT Lee0
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Using GenomicRanges with table data
iranges genomicranges written 6.8 years ago by Tom Oates60 • updated 6.8 years ago by Steve Lianoglou12k
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ReportingTools - trouble incorporating annotations
annotation edger genomicranges written 6.4 years ago by Sam McInturf300 • updated 6.4 years ago by James W. MacDonald51k
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Merge multiple genomic intervals if overlapping more than xx percents
genomicranges written 4.5 years ago by samuel collombet140 • updated 4.5 years ago by Hervé Pagès ♦♦ 14k
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