28
votes
4
answers
2.6k
views
10 follow
4
answers
10
votes
3
answers
6.9k
views
6 follow
3
answers
DESeq2: add annotations (from data frame) to DESeqDataSet
annotation deseq2 granges written 4.1 years ago by Darya Vanichkina100 • updated 2.9 years ago by bioprog0
10
votes
3
answers
1.3k
views
6 follow
3
answers
Transitive overlaps of GRanges object
granges findoverlaps written 3.8 years ago by Stefanie Tauber40 • updated 3.8 years ago by Hervé Pagès ♦♦ 13k
8
votes
2
answers
723
views
6 follow
2
answers
22
votes
2
answers
4.9k
views
5 follow
2
answers
11
votes
3
answers
7.1k
views
3
answers
How to properly sort GRanges?
genomicranges granges seqnames sort order written 4.1 years ago by enricoferrero570 • updated 3.7 years ago by yinghua30
3
votes
3
answers
3.0k
views
3
answers
5
votes
2
answers
2.5k
views
2
answers
6
votes
1
answer
682
views
1
answer
0
votes
1
answer
189
views
1
answer
Compute average score across multiple bed files
granges R chip-seq bed files written 4 months ago by jinseok0 • updated 4 months ago by spotifywebplayer0
4
votes
3
answers
183
views
3
answers
the closest gene to a breakpoint
granges plyranges written 3 months ago by Bogdan530 • updated 3 months ago by Gordon Smyth35k
3
votes
1
answer
998
views
1
answer
Granges and reference genome
granges written 4.2 years ago by Asma rabe290 • updated 4.2 years ago by Sean Davis21k
5
votes
1
answer
545
views
1
answer
Calling coverage on GRanges object yields small negative values
coverage granges written 3.7 years ago by Anya10 • updated 3.7 years ago by Hervé Pagès ♦♦ 13k
1
vote
1
answer
959
views
1
answer
Rsamtools memory leak
iranges rsamtools granges bam scanbam written 3.1 years ago by mhills10
4
votes
1
answer
767
views
1
answer
9
votes
1
answer
1.8k
views
1
answer
manipulate bedpe format files
rtracklayer granges bedpe structural variants written 2.8 years ago by tangming200590 • updated 2.8 years ago by Aaron Lun21k
8
votes
1
answer
3.0k
views
1
answer
6
votes
3
answers
431
views
3
answers
3
votes
1
answer
333
views
1
answer
5
votes
1
answer
197
views
1
answer
0
votes
3
answers
2.8k
views
3
answers
4
votes
2
answers
776
views
2
answers
Overlap the snps
iranges granges overlap snps written 4.2 years ago by anastasiya-terskih10 • updated 4.2 years ago by Michael Lawrence10k
3
votes
2
answers
2.0k
views
2
answers
0
votes
0
answers
701
views
0
answers
8
votes
2
answers
1.3k
views
2
answers
import wig to coverage
rtracklayer granges import.wig written 3.9 years ago by liz.ingsimmons120 • updated 3.9 years ago by Hervé Pagès ♦♦ 13k
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