28
votes
4
answers
2.3k
views
10 follow
4
answers
10
votes
3
answers
6.3k
views
6 follow
3
answers
DESeq2: add annotations (from data frame) to DESeqDataSet
annotation deseq2 granges written 3.9 years ago by Darya Vanichkina100 • updated 2.7 years ago by bioprog0
10
votes
3
answers
1.2k
views
6 follow
3
answers
Transitive overlaps of GRanges object
granges findoverlaps written 3.6 years ago by Stefanie Tauber40 • updated 3.6 years ago by Hervé Pagès ♦♦ 13k
8
votes
2
answers
621
views
6 follow
2
answers
22
votes
2
answers
4.6k
views
5 follow
2
answers
10
votes
3
answers
6.5k
views
3
answers
How to properly sort GRanges?
genomicranges granges seqnames sort order written 3.9 years ago by enricoferrero570 • updated 3.4 years ago by yinghua30
5
votes
2
answers
2.2k
views
2
answers
6
votes
1
answer
608
views
1
answer
0
votes
1
answer
116
views
1
answer
Compute average score across multiple bed files
granges R chip-seq bed files written 8 weeks ago by jinseok0 • updated 7 weeks ago by spotifywebplayer0
4
votes
3
answers
92
views
3
answers
the closest gene to a breakpoint
granges plyranges written 24 days ago by Bogdan510 • updated 22 days ago by Gordon Smyth35k
3
votes
1
answer
804
views
1
answer
Granges and reference genome
granges written 4.0 years ago by Asma rabe290 • updated 4.0 years ago by Sean Davis21k
3
votes
2
answers
2.7k
views
2
answers
4
votes
1
answer
717
views
1
answer
9
votes
1
answer
1.6k
views
1
answer
manipulate bedpe format files
rtracklayer granges bedpe structural variants written 2.6 years ago by tangming200590 • updated 2.6 years ago by Aaron Lun21k
8
votes
1
answer
2.6k
views
1
answer
6
votes
3
answers
386
views
3
answers
3
votes
1
answer
256
views
1
answer
5
votes
1
answer
117
views
1
answer
0
votes
3
answers
2.5k
views
3
answers
4
votes
2
answers
706
views
2
answers
Overlap the snps
iranges granges overlap snps written 4.0 years ago by anastasiya-terskih10 • updated 4.0 years ago by Michael Lawrence10k
0
votes
2
answers
1.9k
views
2
answers
0
votes
0
answers
656
views
0
answers
8
votes
2
answers
1.2k
views
2
answers
import wig to coverage
rtracklayer granges import.wig written 3.6 years ago by liz.ingsimmons120 • updated 3.6 years ago by Hervé Pagès ♦♦ 13k
4
votes
1
answer
548
views
1
answer
stacking (partially or completely overlapping) GRanges/IRanges
rnaseq iranges granges written 3.6 years ago by Johannes Rainer1.3k • updated 3.6 years ago by Martin Morgan ♦♦ 22k
3
votes
2
answers
529
views
2
answers
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