28
votes
4
answers
1.7k
views
10 follow
4
answers
9
votes
3
answers
4.6k
views
6 follow
3
answers
DESeq2: add annotations (from data frame) to DESeqDataSet
annotation deseq2 granges written 3.3 years ago by Darya Vanichkina90 • updated 2.1 years ago by bioprog0
10
votes
3
answers
1.0k
views
6 follow
3
answers
Transitive overlaps of GRanges object
granges findoverlaps written 3.0 years ago by Stefanie Tauber40 • updated 3.0 years ago by Hervé Pagès ♦♦ 13k
8
votes
2
answers
455
views
6 follow
2
answers
22
votes
2
answers
3.7k
views
5 follow
2
answers
9
votes
3
answers
5.1k
views
3
answers
How to properly sort GRanges?
genomicranges granges seqnames sort order written 3.3 years ago by enricoferrero560 • updated 2.9 years ago by yinghua20
5
votes
2
answers
1.6k
views
2
answers
6
votes
1
answer
427
views
1
answer
3
votes
1
answer
666
views
1
answer
Granges and reference genome
granges written 3.4 years ago by Asma rabe290 • updated 3.4 years ago by Sean Davis21k
3
votes
2
answers
2.0k
views
2
answers
4
votes
1
answer
596
views
1
answer
9
votes
1
answer
1.3k
views
1
answer
manipulate bedpe format files
rtracklayer granges bedpe structural variants written 2.0 years ago by tangming200590 • updated 2.0 years ago by Aaron Lun18k
6
votes
3
answers
297
views
3
answers
3
votes
1
answer
97
views
1
answer
0
votes
3
answers
2.0k
views
3
answers
4
votes
2
answers
567
views
2
answers
Overlap the snps
iranges granges overlap snps written 3.4 years ago by anastasiya-terskih10 • updated 3.4 years ago by Michael Lawrence9.9k
0
votes
2
answers
1.6k
views
2
answers
0
votes
0
answers
540
views
0
answers
8
votes
2
answers
1.1k
views
2
answers
import wig to coverage
rtracklayer granges import.wig written 3.1 years ago by liz.ingsimmons120 • updated 3.1 years ago by Hervé Pagès ♦♦ 13k
4
votes
1
answer
484
views
1
answer
stacking (partially or completely overlapping) GRanges/IRanges
rnaseq iranges granges written 3.1 years ago by Johannes Rainer1.2k • updated 3.1 years ago by Martin Morgan ♦♦ 21k
3
votes
2
answers
444
views
2
answers
2
votes
2
answers
1.8k
views
2
answers
3
votes
1
answer
436
views
1
answer
Sorting data frame derived from GRanges
granges sort data.frame written 2.3 years ago by igor20 • updated 2.3 years ago by Michael Lawrence9.9k
3
votes
1
answer
481
views
1
answer
0
votes
1
answer
325
views
1
answer
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