28
votes
4
answers
2.0k
views
10 follow
4
answers
10
votes
3
answers
5.5k
views
6 follow
3
answers
DESeq2: add annotations (from data frame) to DESeqDataSet
annotation deseq2 granges written 3.6 years ago by Darya Vanichkina90 • updated 2.4 years ago by bioprog0
10
votes
3
answers
1.1k
views
6 follow
3
answers
Transitive overlaps of GRanges object
granges findoverlaps written 3.3 years ago by Stefanie Tauber40 • updated 3.3 years ago by Hervé Pagès ♦♦ 13k
8
votes
2
answers
554
views
6 follow
2
answers
22
votes
2
answers
4.3k
views
5 follow
2
answers
10
votes
3
answers
6.0k
views
3
answers
How to properly sort GRanges?
genomicranges granges seqnames sort order written 3.6 years ago by enricoferrero560 • updated 3.2 years ago by yinghua30
5
votes
2
answers
2.0k
views
2
answers
6
votes
1
answer
540
views
1
answer
3
votes
1
answer
745
views
1
answer
Granges and reference genome
granges written 3.7 years ago by Asma rabe290 • updated 3.7 years ago by Sean Davis21k
3
votes
2
answers
2.4k
views
2
answers
4
votes
1
answer
671
views
1
answer
9
votes
1
answer
1.5k
views
1
answer
manipulate bedpe format files
rtracklayer granges bedpe structural variants written 2.4 years ago by tangming200590 • updated 2.4 years ago by Aaron Lun19k
6
votes
3
answers
354
views
3
answers
3
votes
1
answer
189
views
1
answer
0
votes
3
answers
2.3k
views
3
answers
4
votes
2
answers
654
views
2
answers
Overlap the snps
iranges granges overlap snps written 3.7 years ago by anastasiya-terskih10 • updated 3.7 years ago by Michael Lawrence10.0k
0
votes
2
answers
1.7k
views
2
answers
0
votes
0
answers
598
views
0
answers
8
votes
2
answers
1.2k
views
2
answers
import wig to coverage
rtracklayer granges import.wig written 3.4 years ago by liz.ingsimmons120 • updated 3.4 years ago by Hervé Pagès ♦♦ 13k
4
votes
1
answer
514
views
1
answer
stacking (partially or completely overlapping) GRanges/IRanges
rnaseq iranges granges written 3.4 years ago by Johannes Rainer1.3k • updated 3.4 years ago by Martin Morgan ♦♦ 21k
3
votes
2
answers
496
views
2
answers
3
votes
2
answers
2.1k
views
2
answers
3
votes
1
answer
489
views
1
answer
Sorting data frame derived from GRanges
granges sort data.frame written 2.7 years ago by igor20 • updated 2.7 years ago by Michael Lawrence10.0k
3
votes
1
answer
534
views
1
answer
0
votes
1
answer
348
views
1
answer
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